RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PSD2Q9BQI7 771 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 CCM2Q9BSQ5 444 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 RWDD1Q9H446 243 aaPredicted RBP4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 DCLRE1BQ9H816 532 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 COQ10BQ9H8M1 238 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 SDF2L1Q9HCN8 221 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 TBC1D13Q9NVG8 400 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 NDUFA13Q9P0J0 144 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 PILRAQ9UKJ1 303 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 GRID1Q9ULK0 1009 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 ENTPD4Q9Y227 616 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 U3KQV3 271 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 KIAA1210Q9ULL0 1709 aa4.37□□□□□ -1.71
HMGB1P13-201ENST00000406019 GREB1LQ9C091 1923 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 IGHV4-61A0A0C4DH41 118 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 SRRM4A7MD48 611 aaKnown RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 ANGPT2O15123 496 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 IGKV3-20P01619 116 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 IGHV4-59P01825 116 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 MT-ND2P03891 347 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 KRT6BP04259 564 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 CT45A8P0DMV1 189 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 CT45A9P0DMV2 189 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 CEACAM1P13688 526 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 NCF1P14598 390 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 ADSSP30520 456 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 KRT6CP48668 564 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 CCL11P51671 97 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 TRA2BP62995 288 aaKnown RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 PMP22Q01453 160 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 TRIM29Q14134 588 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 P2RY6Q15077 328 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 KRT31Q15323 416 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 SPHARQ15513 63 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 CT45A2Q5DJT8 189 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 NKAIN2Q5VXU1 208 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 CEACAM20Q6UY09 585 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 FOXL2NBQ6ZUU3 175 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 PPP1R42Q7Z4L9 355 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 ISCA2Q86U28 154 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 PIGZQ86VD9 579 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 TBC1D21Q8IYX1 336 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 KIRREL3Q8IZU9 778 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 GPC2Q8N158 579 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 CIARTQ8N365 385 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 FAM89BQ8N5H3 189 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 METTL27Q8N6F8 245 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 KBTBD3Q8NAB2 608 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 POC1AQ8NBT0 407 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 LEMD2Q8NC56 503 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 NXPE2Q96DL1 559 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 DTNBP1Q96EV8 351 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 SSX3Q99909 188 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 DPEP2Q9H4A9 486 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 YY1AP1Q9H869 796 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 HOMER3Q9NSC5 361 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 ECHDC1Q9NTX5 307 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 DDX28Q9NUL7 540 aaKnown RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 TMOD3Q9NYL9 352 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 NARFQ9UHQ1 456 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 ELF5Q9UKW6 265 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 PLA2G4CQ9UP65 541 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 NCKAP1Q9Y2A7 1128 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 DISP3Q9P2K9 1392 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 NPC1L1Q9UHC9 1359 aa4.36□□□□□ -1.71
HMGB1P13-201ENST00000406019 A0A1B0GWJ7 208 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 TMEM89A2RUT3 159 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 BOLA2-SMG1P6H3BVE0 249 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 CLDN3O15551 220 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 AK1P00568 194 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 HSPA5P11021 654 aaKnown RBP4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 PAX7P23759 505 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 MARCKSP29966 332 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 PRDX6P30041 224 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 PKLRP30613 574 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 CCR4P51679 360 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 ARFIP1P53367 373 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 DVL1P1P54792 670 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 HERV-K104P63124 156 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 SP3Q02447 781 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 MFGE8Q08431 387 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 ITGA9Q13797 1035 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 CEACAM7Q14002 265 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 GRB14Q14449 540 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 PDIA5Q14554 519 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 TEX35Q5T0J7 233 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 RIPPLY2Q5TAB7 128 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 LCN1P1Q5VSP4 162 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 PLPP4Q5VZY2 271 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 SLC25A24Q6NUK1 477 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 SLC27A4Q6P1M0 643 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 AFTPHQ6ULP2 937 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 FAM159AQ6UWV7 190 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 SLC24A5Q71RS6 500 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 MARVELD2Q8N4S9 558 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 SLC37A3Q8NCC5 494 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 OR1L3Q8NH93 324 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 FCAMRQ8WWV6 532 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 NODALQ96S42 347 aa4.35□□□□□ -1.71
HMGB1P13-201ENST00000406019 S1PR3Q99500 378 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms