RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CLHC1Q8NHS4 586 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 RP9Q8TA86 221 aaKnown RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 UTP15Q8TED0 518 aaKnown RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 NSL1Q96IY1 281 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 FCRL1Q96LA6 429 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 SERINC2Q96SA4 455 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 CMKLR1Q99788 373 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 SLC25A23Q9BV35 468 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 CCDC106Q9BWC9 280 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 DDX31Q9H8H2 851 aaKnown RBP13.5□□□□□ -0.25
SKA1-202ENST00000398452 STARD5Q9NSY2 213 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 ATAD3AQ9NVI7 634 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 NDOR1Q9UHB4 597 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 BAIAP2L1Q9UHR4 511 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 TAGLN3Q9UI15 199 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 PHF11Q9UIL8 331 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 CDC14AQ9UNH5 594 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 DLGAP4Q9Y2H0 992 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 HEATR5BQ9P2D3 2071 aa13.5□□□□□ -0.25
SKA1-202ENST00000398452 FAM234BA2RU67 622 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 ERICH4A6NGS2 130 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 CCDC154A6NI56 674 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 CFLARO15519 480 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 P2RX6O15547 441 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 AKAP10O43572 662 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 GBAP04062 536 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 SNRPB2P08579 225 aaKnown RBP13.49□□□□□ -0.25
SKA1-202ENST00000398452 CEACAM1P13688 526 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 COX7A2P14406 83 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 CALB2P22676 271 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 JAK1P23458 1154 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 ATP5A1P25705 553 aaKnown RBP13.49□□□□□ -0.25
SKA1-202ENST00000398452 BUD31P41223 144 aaPredicted RBP13.49□□□□□ -0.25
SKA1-202ENST00000398452 MRPL19P49406 292 aaKnown RBP13.49□□□□□ -0.25
SKA1-202ENST00000398452 POLR2JP52435 117 aaKnown RBP13.49□□□□□ -0.25
SKA1-202ENST00000398452 TAS2R50P59544 299 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 C2orf80Q0P641 193 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 SLAMF1Q13291 335 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 PTGR1Q14914 329 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 TMEM214Q6NUQ4 689 aaKnown RBP13.49□□□□□ -0.25
SKA1-202ENST00000398452 SLITRK4Q8IW52 837 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 ACOT4Q8N9L9 421 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 VPS37AQ8NEZ2 397 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 C16orf78Q8WTQ4 265 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 DEPDC7Q96QD5 511 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 OR6C1Q96RD1 312 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 SORBS1Q9BX66 1292 aaKnown RBP13.49□□□□□ -0.25
SKA1-202ENST00000398452 MYNNQ9NPC7 610 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.49□□□□□ -0.25
SKA1-202ENST00000398452 MS4A12Q9NXJ0 267 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 SRPK3Q9UPE1 567 aa13.49□□□□□ -0.25
SKA1-202ENST00000398452 LOC100653049A0A140TA62 436 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 EFCAB7A8K855 629 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 BBIP1A8MTZ0 92 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 C1QTNF9BB2RNN3 333 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 KRT34O76011 436 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 UBOX5O94941 541 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 LRATO95237 230 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 IL6P05231 212 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 HBQ1P09105 142 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 FAM58BPP0C7Q3 252 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 C1QTNF9P0C862 333 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 COX4I1P13073 169 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 FOLR1P15328 257 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 IL1RNP18510 177 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 CSRP1P21291 193 aaKnown RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 GPX3P22352 226 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 ALAS2P22557 587 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 CERS1P27544 350 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 TPP2P29144 1249 aaPredicted RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 CCKBRP32239 447 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 S100A3P33764 101 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 ALDH9A1P49189 494 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 UFM1P61960 85 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 SIM1P81133 766 aaPredicted RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 SRSF11Q05519 484 aaKnown RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 HYAL2Q12891 473 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 FAM53BQ14153 422 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 PRTGQ2VWP7 1150 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 TMPRSS9Q7Z410 1059 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 PIP4P1Q86T03 277 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 SNX32Q86XE0 403 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 PPP1R3BQ86XI6 285 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 TMEM126BQ8IUX1 230 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 NATD1Q8N6N6 113 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 PCYOX1LQ8NBM8 494 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 ADAMTS18Q8TE60 1221 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 TSPEARQ8WU66 669 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 GFM2Q969S9 779 aaKnown RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 PPCDCQ96CD2 204 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 NPLQ9BXD5 320 aaPredicted RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 SPRTNQ9H040 489 aaPredicted RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 ZNF385DQ9H6B1 395 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 RMND5AQ9H871 391 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 CLK4Q9HAZ1 481 aaKnown RBP13.48□□□□□ -0.25
SKA1-202ENST00000398452 PRDM7Q9NQW5 492 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 CUTCQ9NTM9 273 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 GIMAP4Q9NUV9 329 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 FBXW2Q9UKT8 454 aa13.48□□□□□ -0.25
SKA1-202ENST00000398452 PSME2Q9UL46 239 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms