RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 MGAT2Q10469 447 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TCEA2Q15560 299 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TMEM164Q5U3C3 297 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 HHATQ5VTY9 493 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 PAGE2Q7Z2X7 111 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 PIGWQ7Z7B1 504 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 NUDT13Q86X67 352 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 HPS6Q86YV9 775 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ACOT4Q8N9L9 421 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 OIT3Q8WWZ8 545 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 C19orf60Q96EN9 201 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 IMMP1LQ96LU5 166 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 PELOQ9BRX2 385 aaKnown RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 PFDN4Q9NQP4 134 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 FARSBQ9NSD9 589 aaKnown RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 INTS9Q9NV88 658 aaKnown RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 C1orf109Q9NX04 203 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 CIDEBQ9UHD4 219 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 KLHL20Q9Y2M5 609 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 GPR45Q9Y5Y3 372 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TMPRSS11DO60235 418 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 CTNSO60931 367 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 BMP10O95393 424 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 MPSTP25325 297 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 RBMS1P29558 406 aaKnown RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 PPP2R1BP30154 601 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 CDH13P55290 713 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 CLDN6P56747 220 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 ERVK-8P63133 956 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 GSTA3Q16772 222 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 RPS27LQ71UM5 84 aaKnown RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 COMMD6Q7Z4G1 85 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 TAX1BP1Q86VP1 789 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 FAM9CQ8IZT9 166 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF441Q8N8Z8 693 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 MDM1Q8TC05 714 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 CDK15Q96Q40 435 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 AIG1Q9NVV5 245 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 TUBD1Q9UJT1 453 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 PCDHGB7Q9Y5F8 929 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 A0A0J9YVX5 310 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 TGFBR3LH3BV60 316 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 K7ENP7 123 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 PLOD2O00469 737 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 SCN2BO60939 215 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 ITGB2P05107 769 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 JMJD7P0C870 316 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 TXNL4AP83876 142 aaKnown RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 KLC1Q07866 573 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 LRRC74AQ0VAA2 488 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 RBBP7Q16576 425 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 C6orf136Q5SQH8 315 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 SLC48A1Q6P1K1 146 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 TRIM40Q6P9F5 258 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 INO80CQ6PI98 192 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 UNQ6494/PRO21346Q6UXR6 183 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 WDR75Q8IWA0 830 aaKnown RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 C2orf73Q8N5S3 287 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 OR8J2Q8NGG1 315 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 M1APQ8TC57 530 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 METTL6Q8TCB7 284 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 KCNA7Q96RP8 456 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 MYLK2Q9H1R3 596 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 ANKHQ9HCJ1 492 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 KLHL14Q9P2G3 628 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 KCND3Q9UK17 655 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 NAALAD2Q9Y3Q0 740 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 PIP5K1BO14986 540 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 RASSF9O75901 435 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 KIAA0754O94854 1291 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 FHP07954 510 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 SOX11P35716 441 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 HNRNPH2P55795 449 aaKnown RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 CLDN8P56748 225 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 BIRC2Q13490 618 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 COQ5Q5HYK3 327 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 GPR135Q8IZ08 494 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 ZSCAN1Q8NBB4 408 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 APIPQ96GX9 242 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 PHF12Q96QT6 1004 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 SDR39U1Q9NRG7 319 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-202ENST00000394943 SOHLH2Q9NX45 425 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 ZIM2Q9NZV7 527 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 PISDQ9UG56 409 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 PADI1Q9ULC6 663 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 ANGPTL3Q9Y5C1 460 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 USH1CQ9Y6N9 552 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 GVINP1Q7Z2Y8 2422 aa6.61□□□□□ -1.35
LIMA1-202ENST00000394943 A0A087WV62 115 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 IGHV1-45A0A0A0MS14 117 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 C1orf226A1L170 272 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 EEDO75530 441 aaKnown RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 HPP00738 406 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 IGKV3-11P04433 115 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ZGLP1P0C6A0 271 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 RNH1P13489 461 aaKnown RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 DDCP20711 480 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 S1PR1P21453 382 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 MMP11P24347 488 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 RPL3P39023 403 aaKnown RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms