RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PPCDCQ96CD2 204 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 EGLN2Q96KS0 407 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 KCNC2Q96PR1 638 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 SLC38A3Q99624 504 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 TBCDQ9BTW9 1192 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 BDH2Q9BUT1 245 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 GORASP2Q9H8Y8 452 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 MIEF1Q9NQG6 463 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 ZNF639Q9UID6 485 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 BTNL2Q9UIR0 455 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 FBXO4Q9UKT5 387 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 MYRFQ9Y2G1 1151 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 TDRD6O60522 2096 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 A0A0C4DFX4 3053 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 LRIT2A6NDA9 550 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 TMEM221A6NGB7 291 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 M0R296 226 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 LCMT2O60294 686 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 TFAP2AP05549 437 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 GGT1P19440 569 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 CNR2P34972 360 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 SSR2P43308 183 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 POLE2P56282 527 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 ADPRMQ3LIE5 342 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 LRIF1Q5T3J3 769 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 GLYATQ6IB77 296 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 OR4C11Q6IEV9 310 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 OGFOD3Q6PK18 319 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 FIGLAQ6QHK4 219 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 ASPGQ86U10 573 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 IFNEQ86WN2 208 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 RERGQ96A58 199 aaPredicted RBP17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 COQ8BQ96D53 544 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 FAIM2Q9BWQ8 316 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 TUBA8Q9NY65 449 aaPredicted RBP17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 PCDHGB4Q9UN71 923 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 TP53BP1Q12888 1972 aaPredicted RBP17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 PRUNE2Q8WUY3 3088 aa17.34■□□□□ 0.37
CCDC88C-203ENST00000389856 SPAG17Q6Q759 2223 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 SOCS2O14508 198 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 UBXN7O94888 489 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 SCELO95171 688 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 CKMT2P17540 419 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 ZNF10P21506 573 aaPredicted RBP17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 PPIBP23284 216 aaKnown RBP17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 MYF6P23409 242 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 BSGP35613 385 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 EPHA4P54764 986 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 TAS2R50P59544 299 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 KCTD21Q4G0X4 260 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 C14orf28Q4W4Y0 310 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 FAM98BQ52LJ0 330 aaKnown RBP17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 OR4F3Q6IEY1 312 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 FAM71E1Q6IPT2 247 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 C17orf82Q86X59 251 aaPredicted RBP17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 PLD3Q8IV08 490 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 CBR4Q8N4T8 237 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 CAMKVQ8NCB2 501 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 OR2L5Q8NG80 312 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 OR7A2PQ8NGA2 310 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 FLVCR1-AS1Q8TAF5 88 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 NT5CQ8TCD5 201 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 PPM1MQ96MI6 270 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 PANX1Q96RD7 426 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 UGT2B28Q9BY64 529 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 YTHDF1Q9BYJ9 559 aaKnown RBP17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 NLNQ9BYT8 704 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 DDX31Q9H8H2 851 aaKnown RBP17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 SH3BP4Q9P0V3 963 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 CORO2BQ9UQ03 480 aa17.33■□□□□ 0.37
CCDC88C-203ENST00000389856 ABCA7Q8IZY2 2146 aa17.33■□□□□ 0.36
CCDC88C-203ENST00000389856 RNF103-CHMP3A0A140T963 221 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 A0A1B0GVT2 93 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 EVPLLA8MZ36 301 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 H3BNH8 94 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 YKT6O15498 198 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 DFNA5O60443 496 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 DEAF1O75398 565 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 RAP2AP10114 183 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 MAGP20916 626 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 TPP2P29144 1249 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 GSTT1P30711 240 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 HOXD12P35452 270 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 CTSKP43235 329 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 PDE7AQ13946 482 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 TOR1AIP1Q5JTV8 583 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 MANEAQ5SRI9 462 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 GAL3ST3Q96A11 431 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 RMND5BQ96G75 393 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF764Q96H86 408 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 ZFYVE21Q9BQ24 234 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 TRIM4Q9C037 500 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 RPF2Q9H7B2 306 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 DNAAF2Q9NVR5 837 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 SLAMF8Q9P0V8 285 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 POMT2Q9UKY4 750 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 SAC3D1A6NKF1 404 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 GABRR3A8MPY1 467 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 RHPN2P1A8MT19 583 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms