RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 KIAA2013Q8IYS2 634 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 NLNQ9BYT8 704 aa25.47■■□□□ 1.67
MSX1-201ENST00000382723 A8MU76 341 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 CIB2O75838 187 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 NPPAP01160 153 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 TCN1P20061 433 aaPredicted RBP25.46■■□□□ 1.67
MSX1-201ENST00000382723 SLC6A2P23975 617 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 TSFMP43897 325 aaKnown RBP25.46■■□□□ 1.67
MSX1-201ENST00000382723 DAB2P98082 770 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 FOXM1Q08050 763 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 PDE7AQ13946 482 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 HEPACAMQ14CZ8 416 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 SUZ12Q15022 739 aaKnown RBP25.46■■□□□ 1.67
MSX1-201ENST00000382723 ZCCHC7Q8N3Z6 543 aaKnown RBP25.46■■□□□ 1.67
MSX1-201ENST00000382723 MIEF2Q96C03 454 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 FAM120CQ9NX05 1096 aaKnown RBP25.46■■□□□ 1.67
MSX1-201ENST00000382723 TMEM181Q9P2C4 612 aa25.46■■□□□ 1.67
MSX1-201ENST00000382723 ATXN7L1Q9ULK2 861 aaPredicted RBP25.46■■□□□ 1.67
MSX1-201ENST00000382723 WBP11Q9Y2W2 641 aaKnown RBP25.46■■□□□ 1.67
MSX1-201ENST00000382723 LNP1A1A4G5 178 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 MAP3K7O43318 606 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 GSNP06396 782 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 DDCP20711 480 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 MSX2P35548 267 aaPredicted RBP25.45■■□□□ 1.67
MSX1-201ENST00000382723 TRA2BP62995 288 aaKnown RBP25.45■■□□□ 1.67
MSX1-201ENST00000382723 KCNAB1Q14722 419 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 PRSS53Q2L4Q9 553 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 MUM1Q2TAK8 710 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 RABL3Q5HYI8 236 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 LAIR1Q6GTX8 287 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 NANOGP8Q6NSW7 305 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 TMEM214Q6NUQ4 689 aaKnown RBP25.45■■□□□ 1.67
MSX1-201ENST00000382723 WDR74Q6RFH5 385 aaPredicted RBP25.45■■□□□ 1.67
MSX1-201ENST00000382723 MSANTD1Q6ZTZ1 278 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 CLECL1Q8IZS7 167 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 MTERF3Q96E29 417 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 CGREF1Q99674 301 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 KCNH6Q9H252 994 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 DENND2DQ9H6A0 471 aaPredicted RBP25.45■■□□□ 1.67
MSX1-201ENST00000382723 SYNDIG1Q9H7V2 258 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 NANOGQ9H9S0 305 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 SLC6A13Q9NSD5 602 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 ATAD3AQ9NVI7 634 aa25.45■■□□□ 1.67
MSX1-201ENST00000382723 NIPSNAP3AQ9UFN0 247 aaPredicted RBP25.45■■□□□ 1.67
MSX1-201ENST00000382723 SCN2BO60939 215 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 SMIM10L1P0DMW3 83 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 CDKN2CP42773 168 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 ARL4DP49703 201 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 GTDC1Q4AE62 458 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 MANEAQ5SRI9 462 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 NDUFAF5Q5TEU4 345 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 FAM180BQ6P0A1 224 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 SLC15A3Q8IY34 581 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 FAM156AQ8NDB6 213 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 WDR60Q8WVS4 1066 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 NAT6Q93015 286 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 UCN3Q969E3 161 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 CIDECQ96AQ7 238 aaPredicted RBP25.45■■□□□ 1.66
MSX1-201ENST00000382723 SMIM10Q96HG1 83 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 BHLHE41Q9C0J9 482 aaPredicted RBP25.45■■□□□ 1.66
MSX1-201ENST00000382723 PAIP1Q9H074 479 aaKnown RBP25.45■■□□□ 1.66
MSX1-201ENST00000382723 IRAK4Q9NWZ3 460 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 CMTM6Q9NX76 183 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 VAPAQ9P0L0 249 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 C5AR2Q9P296 337 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 MAN2B2Q9Y2E5 1009 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 ASB4Q9Y574 426 aa25.45■■□□□ 1.66
MSX1-201ENST00000382723 MN1Q10571 1320 aaPredicted RBP25.44■■□□□ 1.66
MSX1-201ENST00000382723 RFXANKO14593 260 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 CPSF4O95639 269 aaKnown RBP25.44■■□□□ 1.66
MSX1-201ENST00000382723 RPLP0P05388 317 aaKnown RBP25.44■■□□□ 1.66
MSX1-201ENST00000382723 ALOX12P18054 663 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 GSTM5P46439 218 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 CCL7P80098 99 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 MRM1Q6IN84 353 aaKnown RBP25.44■■□□□ 1.66
MSX1-201ENST00000382723 N4BP2L2Q92802 583 aaPredicted RBP25.44■■□□□ 1.66
MSX1-201ENST00000382723 PANX1Q96RD7 426 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 PLCL2Q9UPR0 1127 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 L3MBTL1Q9Y468 752 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 ATG4BQ9Y4P1 393 aa25.44■■□□□ 1.66
MSX1-201ENST00000382723 PRSS51A0A1B0GVH4 220 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 NME4O00746 187 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 SRPX2O60687 465 aaPredicted RBP25.43■■□□□ 1.66
MSX1-201ENST00000382723 PRKRAO75569 313 aaKnown RBP25.43■■□□□ 1.66
MSX1-201ENST00000382723 ANP32DO95626 131 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 IL1RNP18510 177 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 KPNB1Q14974 876 aaKnown RBP25.43■■□□□ 1.66
MSX1-201ENST00000382723 PROX2Q3B8N5 592 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 ANXA8L1Q5VT79 327 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 C1orf146Q5VVC0 180 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 PRSS41Q7RTY9 318 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 VPS37AQ8NEZ2 397 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 IFI44Q8TCB0 444 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 TMEM125Q96AQ2 219 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 COL25A1Q9BXS0 654 aaPredicted RBP25.43■■□□□ 1.66
MSX1-201ENST00000382723 ROGDIQ9GZN7 287 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 SLC25A37Q9NYZ2 338 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 PCDHB14Q9Y5E9 798 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 PCDHA9Q9Y5H5 950 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 A0A096LPI6 279 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms