RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FNDC8Q8TC99 324 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 SPPL2AQ8TCT8 520 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 F2RL3Q96RI0 385 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 SIGLEC11Q96RL6 698 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 PITX2Q99697 317 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 SPATA9Q9BWV2 254 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 PLA2G2FQ9BZM2 168 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 ITM2CQ9NQX7 267 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 SPASTQ9UBP0 616 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 TAC3Q9UHF0 121 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 KIF26AQ9ULI4 1882 aaPredicted RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 WASHC1A8K0Z3 465 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 LATO43561 262 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 HOXB6P17509 224 aaKnown RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 ALDH4A1P30038 563 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 MAPK9P45984 424 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 FOXD4Q12950 439 aaPredicted RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 ADPRMQ3LIE5 342 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 WASH2PQ6VEQ5 465 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 CCDC103Q8IW40 242 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 TFGQ92734 400 aaPredicted RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 POP5Q969H6 163 aaKnown RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 CXorf40BQ96DE9 158 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 ZCCHC2Q9C0B9 1178 aaKnown RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 AICDAQ9GZX7 198 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 RNF6Q9Y252 685 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 OR1A2Q9Y585 309 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 M0R129 80 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 ARHGDIAP52565 204 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 FGL2Q14314 439 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 TSPYL5Q86VY4 417 aaPredicted RBP12.77□□□□□ -0.36
CCDC3-202ENST00000378839 ANKRD13BQ86YJ7 626 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 NDNFQ8TB73 568 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 SMARCD2Q92925 531 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 YIPF6Q96EC8 236 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 WFDC6Q9BQY6 131 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 ADPRHL2Q9NX46 363 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 SELENONQ9NZV5 590 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 KIF17Q9P2E2 1029 aa12.77□□□□□ -0.36
CCDC3-202ENST00000378839 SH3PXD2BA1X283 911 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 TBC1D3BA6NDS4 549 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 VEGFDO43915 354 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 DPM1O60762 260 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 FADS2O95864 444 aaKnown RBP12.77□□□□□ -0.37
CCDC3-202ENST00000378839 EPHX1P07099 455 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 CA3P07451 260 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 ERGP11308 486 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 PIK3CBP42338 1070 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 LSM3P62310 102 aaKnown RBP12.77□□□□□ -0.37
CCDC3-202ENST00000378839 CDK3Q00526 305 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 RPS26P11Q5JNZ5 115 aaPredicted RBP12.77□□□□□ -0.37
CCDC3-202ENST00000378839 PAGE2BQ5JRK9 111 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 GCNT6Q5T4J0 391 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 VITQ6UXI7 678 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 FAM20CQ8IXL6 584 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 LINC01555Q8NAE3 123 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 OR9Q2Q8NGE9 314 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 GABARAPL3Q9BY60 117 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 TAS2R9Q9NYW1 312 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 PMF1-BGLAPU3KQ54 211 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 A0A1W2PRB8 838 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 PCDH17O14917 1159 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 SEMA7AO75326 666 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 NFATC1O95644 943 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 ADRA2AP08913 450 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 BSGP35613 385 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 PCBP3P57721 371 aaKnown RBP12.77□□□□□ -0.37
CCDC3-202ENST00000378839 MAPK11Q15759 364 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 EXOC3L2Q2M3D2 409 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 LCTLQ6UWM7 567 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 AMZ2Q86W34 360 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 PLD3Q8IV08 490 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 CXorf40AQ8TE69 158 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 RHCGQ9UBD6 479 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 SNX5Q9Y5X3 404 aa12.77□□□□□ -0.37
CCDC3-202ENST00000378839 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 H7BY64 318 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 TNFRSF11BO00300 401 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 BCL10O95999 233 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 LCKP06239 509 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 PPIBP23284 216 aaKnown RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 RXRGP48443 463 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 CDK6Q00534 326 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 DUSP7Q16829 419 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 UNC5DQ6UXZ4 953 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 ADAMTSL4Q6UY14 1074 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 CCDC81Q6ZN84 652 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 CCDC80Q76M96 950 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 UBE3DQ7Z6J8 389 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 NLGN4XQ8N0W4 816 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 KLK6Q92876 244 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 TM4SF18Q96CE8 201 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 MAGED4Q96JG8 741 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 HRASLS5Q96KN8 279 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 PRAP1Q96NZ9 151 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF300Q96RE9 604 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 BTBD2Q9BX70 525 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 TMEM38AQ9H6F2 299 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 RUBCNLQ9H714 662 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 AMBNQ9NP70 447 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms