RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ITGA10O75578 1167 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 STBD1O95210 358 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SLC25A27O95847 323 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TRBC1P01850 177 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PIRTP0C851 137 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HOXA7P31268 230 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 AIF1P55008 147 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FLI1Q01543 452 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PTPN11Q06124 597 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 OR5I1Q13606 314 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 COL9A2Q14055 689 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF141Q15928 474 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CPTPQ5TA50 214 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ABHD17BQ5VST6 288 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 GDF6Q6KF10 455 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF529Q6P280 563 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FAM199XQ6PEV8 388 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 KDM7AQ6ZMT4 941 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SNX29P2Q8IUI4 249 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FBXL6Q8N531 539 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 BBS10Q8TAM1 723 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CHPT1Q8WUD6 406 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HAS2Q92819 552 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RPL3LQ92901 407 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 WDR89Q96FK6 387 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PGAM5Q96HS1 289 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PITX2Q99697 317 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 EBNA1BP2Q99848 306 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MAPKAP1Q9BPZ7 522 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RAB18Q9NP72 206 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SLC2A9Q9NRM0 540 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TAS2R3Q9NYW6 316 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 KIAA1456Q9P272 454 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NDRG3Q9UGV2 375 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ADAM29Q9UKF5 820 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HSPB6O14558 160 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ENPP3O14638 875 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 LSSP48449 732 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 THBS3P49746 956 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MFAP4P55083 255 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CRTC2Q53ET0 693 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 STEAP4Q687X5 459 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PHC2Q8IXK0 858 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SPARTQ8N0X7 666 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ARL14Q8N4G2 192 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 KYQ8NBH2 561 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PAPD5Q8NDF8 572 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR9A2Q8NGT5 310 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF675Q8TD23 568 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF416Q9BWM5 594 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 NXF5Q9H1B4 397 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GAREM1Q9H706 876 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 EMC7Q9NPA0 242 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TMPRSS4Q9NRS4 437 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ASIC5Q9NY37 505 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 UHRF1BP1LA0JNW5 1464 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ARFGEF3Q5TH69 2177 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 C4orf47A7E2U8 309 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PHOX2AO14813 284 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TGM5O43548 720 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 USP12O75317 370 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ENTPD6O75354 484 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 COL6A2P12110 1019 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 HGFP14210 728 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GRIA3P42263 894 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MS4A2Q01362 244 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TEAD2Q15562 447 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CES4AQ5XG92 561 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM53Q6P2H8 277 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PNCKQ6P2M8 343 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 POTEHQ6S545 545 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR14L1PQ8NHC6 308 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 AENQ8WTP8 325 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 METTL2AQ96IZ6 378 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 BOCQ9BWV1 1114 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ROPN1BQ9BZX4 212 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZDHHC4Q9NPG8 344 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GRHPRQ9UBQ7 328 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 EIF2B4Q9UI10 523 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DLGAP4Q9Y2H0 992 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 A3GALT2U3KPV4 340 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MLH3Q9UHC1 1453 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DUOX2Q9NRD8 1548 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 A0A087WXM4 84 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 K7EQM0 130 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ECI2O75521 394 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CCNKO75909 580 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 RECQL4O94761 1208 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR8U9P0C7N5 309 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 HKR1P10072 659 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ETS2P15036 469 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TKTP29401 623 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 UGT1A3P35503 534 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ASPAP45381 313 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CDK16Q00536 496 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CNTN2Q02246 1040 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF574Q6ZN55 896 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 REC114Q7Z4M0 266 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM200AQ86VY9 491 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GKN2Q86XP6 184 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms