RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 DFNA5O60443 496 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 RSL1D1O76021 490 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 SEC14L2O76054 403 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 HSD3B1P14060 373 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 CXCR2P25025 360 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 HSD3B2P26439 372 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 PSMB5P28074 263 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 GSTM2P28161 218 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 ELK4P28324 431 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 SLC19A1P41440 591 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 C21orf59P57076 290 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 PHEXP78562 749 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 SLBPQ14493 270 aaKnown RBP eCLIP12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 TJAP1Q5JTD0 557 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 ADNP2Q6IQ32 1131 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 FAM9CQ8IZT9 166 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 RNF175Q8N4F7 328 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 SMYD1Q8NB12 490 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 TBC1D15Q8TC07 691 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 LCN9Q8WX39 176 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 DNASE2BQ8WZ79 361 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 GTF2H4Q92759 462 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 LRRC61Q9BV99 259 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 ACPTQ9BZG2 426 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 BRF2Q9HAW0 419 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 FANCEQ9HB96 536 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 FAM118AQ9NWS6 357 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 VAPAQ9P0L0 249 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 ICKQ9UPZ9 632 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 PCDHB11Q9Y5F2 797 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 CBFA2T3O75081 653 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 DNAJB5O75953 348 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 BCL10O95999 233 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 VIPP01282 170 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 ZNF12P17014 697 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 CSNK1EP49674 416 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 GABARAPL2P60520 117 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 ELOCQ15369 112 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 PRRT3Q5FWE3 981 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 FGD3Q5JSP0 725 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 ZNF548Q8NEK5 533 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 OR7G3Q8NG95 312 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 OR10A6Q8NH74 314 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 FBXO30Q8TB52 745 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 WDR20Q8TBZ3 569 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 CMTM7Q96FZ5 175 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 MTERF1Q99551 399 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 AIF1LQ9BQI0 150 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 OSBPL10Q9BXB5 764 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 SPNS1Q9H2V7 528 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 TOR3AQ9H497 397 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 MAGIXQ9H6Y5 334 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 PELI2Q9HAT8 420 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 PALMDQ9NP74 551 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 TNRC6BQ9UPQ9 1833 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 WDR87Q6ZQQ6 2873 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 KIR2DS5A0A0G2JLQ3 304 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 A0A0G2JNG1 304 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 PIPSLA2A3N6 862 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 KIR2DS3K7RE56 304 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 CXCR6O00574 342 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 GPR37L1O60883 481 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 PGRP06401 933 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 HNRNPCP07910 306 aaKnown RBP eCLIP12.57□□□□□ -0.41e-6■■■□□ 15.2
SQSTM1-201ENST00000360718 PRPH2P23942 346 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 CRHBPP24387 322 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 MAPK1P28482 360 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 CCR8P51685 355 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 PLIN5Q00G26 463 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 NFATC3Q12968 1075 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 KIR2DS5Q14953 304 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 RFX4Q33E94 735 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 FAM174BQ3ZCQ3 159 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 RUNDC3AQ59EK9 446 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 AMIGO1Q86WK6 493 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 C1orf210Q8IVY1 113 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 EID3Q8N140 333 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 ZFPM2Q8WW38 1151 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 SRMSQ9H3Y6 488 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 GPN2Q9H9Y4 310 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 OR6C2Q9NZP2 312 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 C3orf18Q9UK00 162 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 TMED5Q9Y3A6 229 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 ORC6Q9Y5N6 252 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 SNX5Q9Y5X3 404 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 TMEM131Q92545 1883 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 ZSCAN9O15535 394 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 ERN1O75460 977 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 CCNDBP1O95273 360 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 CSF2P04141 144 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 RETP07949 1114 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 NME1P15531 152 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 IL1RNP18510 177 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 MATN1P21941 496 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 CSTF1Q05048 431 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 C6orf141Q5SZD1 244 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 ANKRD26P1Q6NSI1 321 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 TMIGD1Q6UXZ0 262 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 C11orf74Q86VG3 221 aa12.57□□□□□ -0.4
SQSTM1-201ENST00000360718 WDR5BQ86VZ2 330 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms