RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 DCDC5Q6ZRR9 648 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 ZBTB8BQ8NAP8 495 aaPredicted RBP18.5■□□□□ 0.55
COL9A3-201ENST00000343916 C5AR2Q9P296 337 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 ENPP5Q9UJA9 477 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 TPRKBQ9Y3C4 175 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 CORINQ9Y5Q5 1042 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 C2orf16Q68DN1 1984 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 PLPP1O14494 284 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 WBP4O75554 376 aaKnown RBP18.5■□□□□ 0.55
COL9A3-201ENST00000343916 VIPP01282 170 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 MT-ND2P03891 347 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 CTF1Q16619 201 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 C10orf62Q5T681 223 aaPredicted RBP18.5■□□□□ 0.55
COL9A3-201ENST00000343916 PIP5KL1Q5T9C9 394 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 FAM109BQ6ICB4 259 aaPredicted RBP18.5■□□□□ 0.55
COL9A3-201ENST00000343916 PNCKQ6P2M8 343 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 UNC5DQ6UXZ4 953 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 UBE2Q1Q7Z7E8 422 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 ANKRD53Q8N9V6 530 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 RORBQ92753 470 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 COX14Q96I36 57 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 RAD21L1Q9H4I0 556 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 SCN3BQ9NY72 215 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 HSPE1-MOB4S4R3N1 261 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 ATG2BQ96BY7 2078 aa18.5■□□□□ 0.55
COL9A3-201ENST00000343916 FAM20BO75063 409 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 CA3P07451 260 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 KELP23276 732 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 PTX3P26022 381 aaPredicted RBP18.49■□□□□ 0.55
COL9A3-201ENST00000343916 CDH12P55289 794 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 RPS26P62854 115 aaKnown RBP18.49■□□□□ 0.55
COL9A3-201ENST00000343916 CDK3Q00526 305 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 CDK6Q00534 326 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 LCTLQ6UWM7 567 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 SLC9B2Q86UD5 537 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 DCUN1D3Q8IWE4 304 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 ENTHD1Q8IYW4 607 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 CENPSQ8N2Z9 138 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 SLC15A4Q8N697 577 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 APH1BQ8WW43 257 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 HERVK_113Q902F9 699 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 F2RL3Q96RI0 385 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 ARMC7Q9H6L4 198 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 TMEM165Q9HC07 324 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 RWDD3Q9Y3V2 267 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 PCDHGA6Q9Y5G7 932 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 CCDC88CQ9P219 2028 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 FUCA1P04066 466 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 ALDH4A1P30038 563 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 LSM3P62310 102 aaKnown RBP18.49■□□□□ 0.55
COL9A3-201ENST00000343916 PHEXP78562 749 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 SPIBQ01892 262 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 FCHO2Q0JRZ9 810 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 EGFLAMQ63HQ2 1017 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 TRIM40Q6P9F5 258 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 SLC5A8Q8N695 610 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 SETD7Q8WTS6 366 aaKnown RBP18.49■□□□□ 0.55
COL9A3-201ENST00000343916 SELENONQ9NZV5 590 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 OR1A2Q9Y585 309 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 PCDHGB1Q9Y5G3 927 aa18.49■□□□□ 0.55
COL9A3-201ENST00000343916 FUOMA2VDF0 154 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 C1QTNF3-AMACRE9PGA6 284 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 H7BY64 318 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 LATO43561 262 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 PCDH8O95206 1070 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 DRD3P35462 400 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 OPRD1P41143 372 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 ALDH9A1P49189 494 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 EEF1A2Q05639 463 aaKnown RBP18.48■□□□□ 0.55
COL9A3-201ENST00000343916 SFSWAPQ12872 951 aaKnown RBP18.48■□□□□ 0.55
COL9A3-201ENST00000343916 MOGQ16653 247 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 WSCD2Q2TBF2 565 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 IFI44LQ53G44 452 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 TANGO2Q6ICL3 276 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 AHSA2Q719I0 299 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 C17orf64Q86WR6 236 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 ANKRD13BQ86YJ7 626 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 ADGRF3Q8IZF5 1079 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 OXR1Q8N573 874 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 PRAP1Q96NZ9 151 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 ZNF717Q9BY31 904 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-201ENST00000343916 CXorf36Q9H7Y0 433 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 SLAMF7Q9NQ25 335 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 DPP7Q9UHL4 492 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 PNMA8BQ9ULN7 279 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-201ENST00000343916 NINQ8N4C6 2090 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 ANKDD1BA6NHY2 528 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 ADAMDEC1O15204 470 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 DPM1O60762 260 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 PORP16435 677 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-201ENST00000343916 PSMB9P28065 219 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 CXCR4P61073 352 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 FADDQ13158 208 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 CYP2A13Q16696 494 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 LRRTM4Q86VH4 590 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 KRT78Q8N1N4 520 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 PHOSPHO2Q8TCD6 241 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 UBE2E3Q969T4 207 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 NIPSNAP1Q9BPW8 284 aa18.48■□□□□ 0.55
COL9A3-201ENST00000343916 AMBNQ9NP70 447 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms