RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CAPNS2Q96L46 248 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 C3orf14Q9HBI5 128 aa21.43■■□□□ 1.02
TRIM28-202ENST00000341753 RUVBL1Q9Y265 456 aaKnown RBP21.43■■□□□ 1.02
TRIM28-202ENST00000341753 PRRC2BQ5JSZ5 2229 aaKnown RBP21.43■■□□□ 1.02
TRIM28-202ENST00000341753 CYP17A1P05093 508 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 CLEC2LP0C7M8 214 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 HBA1P69905 142 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 NOGQ13253 232 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 DOC2AQ14183 400 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 VN1R5Q7Z5H4 357 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 NOXA1Q86UR1 476 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 SLC7A6Q92536 515 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 TMEM203Q969S6 136 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 GADD45GO95257 159 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 SRCP12931 536 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 HOXD10P28358 340 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 HOXD11P31277 338 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-202ENST00000341753 MVDP53602 400 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 PSPHP78330 225 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 SETD6Q8TBK2 473 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 ASIC4Q96FT7 647 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 FCRL1Q96LA6 429 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 C11orf54Q9H0W9 315 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-202ENST00000341753 ABCB9Q9NP78 766 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 RPRD1BQ9NQG5 326 aaKnown RBP21.42■■□□□ 1.02
TRIM28-202ENST00000341753 A0A0B4J293 547 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 MGAT4DA6NG13 374 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 ERVH48-1M5A8F1 160 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 CSO75390 466 aaKnown RBP21.42■■□□□ 1.02
TRIM28-202ENST00000341753 C1SP09871 688 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 IDSP22304 550 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 TUFMP49411 452 aaKnown RBP21.42■■□□□ 1.02
TRIM28-202ENST00000341753 PRIM2P49643 509 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 RORCP51449 518 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 SMAD3P84022 425 aaKnown RBP21.42■■□□□ 1.02
TRIM28-202ENST00000341753 CDH18Q13634 790 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 SMUG1Q53HV7 270 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 LYPLAL1Q5VWZ2 237 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 FAM180BQ6P0A1 224 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 PAMR1Q6UXH9 720 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 SIMC1Q8NDZ2 872 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 VPS37AQ8NEZ2 397 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 CIDECQ96AQ7 238 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-202ENST00000341753 RNF31Q96EP0 1072 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 IRF2BPLQ9H1B7 796 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 ZDHHC3Q9NYG2 299 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 HCN4Q9Y3Q4 1203 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 YIPF1Q9Y548 306 aa21.42■■□□□ 1.02
TRIM28-202ENST00000341753 PRMT3O60678 531 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 C6orf47O95873 294 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CBSLP0DN79 551 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CBSP35520 551 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 AP1S1P61966 158 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 TEAD4Q15561 434 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 GPR33Q49SQ1 333 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 LIPKQ5VXJ0 399 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CRTC1Q6UUV9 634 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 GLCCI1Q86VQ1 547 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CAMKK1Q8N5S9 505 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 WDR20Q8TBZ3 569 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 GDF15Q99988 308 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 SLC35A5Q9BS91 424 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 RAB23Q9ULC3 237 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 DNMT3AQ9Y6K1 912 aaPredicted RBP21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CCDC182A6NF36 153 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 LRRTM2O43300 516 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CPNE3O75131 537 aaKnown RBP21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CDRT1O95170 752 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 MC1RQ01726 317 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 GPAT3Q53EU6 434 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 TXNDC8Q6A555 127 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 TTC23LQ6PF05 361 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 KRT73Q86Y46 540 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CITED4Q96RK1 184 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 PKP4Q99569 1192 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 KLF16Q9BXK1 252 aaPredicted RBP21.41■■□□□ 1.02
TRIM28-202ENST00000341753 CWH43Q9H720 699 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 NMNAT1Q9HAN9 279 aaPredicted RBP21.41■■□□□ 1.02
TRIM28-202ENST00000341753 SGK2Q9HBY8 427 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 TRPV5Q9NQA5 729 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 FTSJ1Q9UET6 329 aa21.41■■□□□ 1.02
TRIM28-202ENST00000341753 SAP18O00422 153 aaKnown RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 PLD2O14939 933 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 SCG5P05408 212 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 CRYBB2P43320 205 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 CRISP1P54107 249 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 GPLD1P80108 840 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 RUNX1T1Q06455 604 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 GPR65Q8IYL9 337 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 ARL14EPQ8N8R7 260 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 TP53I13Q8NBR0 393 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 HJURPQ8NCD3 748 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 C2orf15Q8WU43 125 aaKnown RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 JPH3Q8WXH2 748 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 PLD4Q96BZ4 506 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 SAMD11Q96NU1 681 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 CMAHPQ9Y471 501 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 C8GP07360 202 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 CA8P35219 290 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 CHRNEQ04844 493 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms