RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RFTN2Q52LD8 501 aaPredicted RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 COX15Q7KZN9 410 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 ZCCHC7Q8N3Z6 543 aaKnown RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 METTL2AQ96IZ6 378 aaKnown RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 IFT80Q9P2H3 777 aaPredicted RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 MAP4K5Q9Y4K4 846 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 FRYQ5TBA9 3013 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 A0A0A6YYD5 115 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 SDHDO14521 159 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 TGDSO95455 350 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 PIM1P11309 404 aaPredicted RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 EPHA3P29320 983 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 RAE1P78406 368 aaKnown RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 SLC9B1Q4ZJI4 515 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 ATP6AP1LQ52LC2 224 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 GALNT18Q6P9A2 607 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 OR51Q1Q8NH59 317 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 PPP3R2Q96LZ3 170 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 NPLQ9BXD5 320 aaPredicted RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 WDR55Q9H6Y2 383 aaPredicted RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 CLK4Q9HAZ1 481 aaKnown RBP20.97■□□□□ 0.95
SDC3-202ENST00000339394 SIRT5Q9NXA8 310 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 TRPC4Q9UBN4 977 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 DAPP1Q9UN19 280 aa20.97■□□□□ 0.95
SDC3-202ENST00000339394 CHST10O43529 356 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 TMPRSS11DO60235 418 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 ALOX15P16050 662 aaPredicted RBP20.96■□□□□ 0.95
SDC3-202ENST00000339394 LIM2P55344 173 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 GNGT1P63211 74 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 C6orf136Q5SQH8 315 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 CCNYL2Q5T2Q4 361 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 MLIPQ5VWP3 458 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 CYP20A1Q6UW02 462 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 CA13Q8N1Q1 262 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 GATA6Q92908 595 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 NKD1Q969G9 470 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 THOC1Q96FV9 657 aaKnown RBP20.96■□□□□ 0.95
SDC3-202ENST00000339394 CHMP6Q96FZ7 201 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 MAELQ96JY0 434 aaKnown RBP20.96■□□□□ 0.95
SDC3-202ENST00000339394 YIPF2Q9BWQ6 316 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 NPHS2Q9NP85 383 aa20.96■□□□□ 0.95
SDC3-202ENST00000339394 GOLGA8QA0A0J9YX86 632 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 ARHGAP10A1A4S6 786 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 GOLGA8OA6NCC3 632 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 GOLGA8NF8WBI6 632 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 PRR35P0CG20 571 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 LIPCP11150 499 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 AQP5P55064 265 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 RPL38P63173 70 aaKnown RBP20.95■□□□□ 0.94
SDC3-202ENST00000339394 TGIF1Q15583 401 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 MRM1Q6IN84 353 aaKnown RBP20.95■□□□□ 0.94
SDC3-202ENST00000339394 NOXRED1Q6NXP6 359 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 EPGNQ6UW88 154 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 FAM198BQ6UWH4 519 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 LARP4Q71RC2 724 aaKnown RBP eCLIP20.95■□□□□ 0.94
SDC3-202ENST00000339394 OVCH1Q7RTY7 1134 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 CACNA2D3Q8IZS8 1091 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 FGF11Q92914 225 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 MAPKAP1Q9BPZ7 522 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 EBPLQ9BY08 206 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 KCMF1Q9P0J7 381 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 CTSFQ9UBX1 484 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 ZNF282Q9UDV7 671 aaPredicted RBP20.95■□□□□ 0.94
SDC3-202ENST00000339394 MCM8Q9UJA3 840 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 TMED5Q9Y3A6 229 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 POLR3HQ9Y535 204 aaPredicted RBP20.95■□□□□ 0.94
SDC3-202ENST00000339394 ZFHX4Q86UP3 3567 aa20.95■□□□□ 0.94
SDC3-202ENST00000339394 PCDH7O60245 1069 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 DIAPH2O60879 1101 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 VPS4BO75351 444 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 FAM58BPP0C7Q3 252 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 TCN2P20062 427 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 TIA1P31483 386 aaKnown RBP eCLIP20.94■□□□□ 0.94
SDC3-202ENST00000339394 STAT5AP42229 794 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 SEC24CP53992 1094 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 CGB2Q6NT52 195 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 MRPL14Q6P1L8 145 aaKnown RBP20.94■□□□□ 0.94
SDC3-202ENST00000339394 FNDC5Q8NAU1 212 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 PEX11GQ96HA9 241 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 TRIM55Q9BYV6 548 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 LYRM4Q9HD34 91 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 DCTN4Q9UJW0 460 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 ADAM21Q9UKJ8 722 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 FBXW2Q9UKT8 454 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 ASB4Q9Y574 426 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 SEC16AO15027 2179 aa20.94■□□□□ 0.94
SDC3-202ENST00000339394 GNG14A0A1W2PPG7 69 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 C9J4A7 227 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 ALBP02768 609 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 ANXA4P09525 319 aaPredicted RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 XCR1P46094 333 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 MAPK12P53778 367 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 VWA2Q5GFL6 755 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 GPR180Q86V85 440 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 IL22RA1Q8N6P7 574 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 RFWD2Q8NHY2 731 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 CT55Q8WUE5 264 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 FKBP10Q96AY3 582 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 FCRL1Q96LA6 429 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 EBF4Q9BQW3 602 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms