RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MRPL9Q9BYD2 267 aaKnown RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 TRIM7Q9C029 511 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 UPF3AQ9H1J1 476 aaKnown RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 MMADHCQ9H3L0 296 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 CUEDC2Q9H467 287 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 DBNDD1Q9H9R9 158 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 RNPEPL1Q9HAU8 725 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 CNIH4Q9P003 139 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 DBF4Q9UBU7 674 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-201ENST00000326004 ASIC3Q9UHC3 531 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 PRSS21Q9Y6M0 314 aa2.84□□□□□ -1.95
HMGB1-201ENST00000326004 GON4LQ3T8J9 2241 aa2.84□□□□□ -1.96
HMGB1-201ENST00000326004 FHAD1B1AJZ9 1412 aa2.84□□□□□ -1.96
HMGB1-201ENST00000326004 NHSL1Q5SYE7 1610 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 IGKV3D-15A0A087WSY6 115 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 A0A087X0K7 114 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 MEX3AA1L020 520 aaKnown RBP2.83□□□□□ -1.96
HMGB1-201ENST00000326004 MAGEB16A2A368 324 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF732B4DXR9 585 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 M0R296 226 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 TFECO14948 347 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-201ENST00000326004 FMO6PO60774 539 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CGAP01215 116 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF883P0CG24 379 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 UROSP10746 265 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ATP6V1B1P15313 513 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 FEN1P39748 380 aaKnown RBP2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CLCN4P51793 760 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ERVK-16P61578 105 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 FKBP1BP68106 108 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CNTN1Q12860 1018 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CALCOCO2Q13137 446 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 RCN2Q14257 317 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 NECTIN1Q15223 517 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF674Q2M3X9 581 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 LRRC37A5PQ49AS3 106 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 C2CD6Q53TS8 623 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF776Q68DI1 518 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-201ENST00000326004 LCLAT1Q6UWP7 414 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 METTL7BQ6UX53 244 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF497Q6ZNH5 498 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZFAND4Q86XD8 727 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CCDC83Q8IWF9 413 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 UNC45BQ8IWX7 931 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZC3H3Q8IXZ2 948 aaKnown RBP2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CCDC170Q8IYT3 715 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 METTL4Q8N3J2 472 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 C10orf53Q8N6V4 93 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 RPLP0P6Q8NHW5 317 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 SEPT8Q92599 483 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 GTF3AQ92664 365 aaKnown RBP2.83□□□□□ -1.96
HMGB1-201ENST00000326004 AP2M1Q96CW1 435 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF599Q96NL3 588 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 AGAP4Q96P64 663 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 PANX3Q96QZ0 392 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 LGMNQ99538 433 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CCM2Q9BSQ5 444 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 SLC39A8Q9C0K1 460 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 CWC25Q9NXE8 425 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-201ENST00000326004 NLGN3Q9NZ94 848 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 KLK11Q9UBX7 282 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 NEDD4P46934 1319 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 JCADQ9P266 1359 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 TRAPPC8Q9Y2L5 1435 aa2.83□□□□□ -1.96
HMGB1-201ENST00000326004 ALKQ9UM73 1620 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 A0A0J9YWU9 116 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 CCDC162PA2VCL2 907 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 SERINC4A6NH21 518 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 RTCAO00442 366 aaKnown RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 TRAFD1O14545 582 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 TLX2O43763 284 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 BAG2O95816 211 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 SERPINB2P05120 415 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 RPLP0P05388 317 aaKnown RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 VCLP18206 1134 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 PDHA2P29803 388 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 MAGEB1P43366 347 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 HILS1P60008 231 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 TEFQ10587 303 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF177Q13360 481 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 NFATC2Q13469 925 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 GPR50Q13585 617 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 FAM189A2Q15884 450 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 PLPP4Q5VZY2 271 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 C17orf107Q6ZR85 190 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 Q6ZVQ6 151 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 RFPL4BQ6ZWI9 263 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 KCTD9Q7L273 389 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 DEFB132Q7Z7B7 95 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 DND1Q8IYX4 353 aaKnown RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 CNPY4Q8N129 248 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 ELMOD1Q8N336 334 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 ARL10Q8N8L6 244 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 SMYD1Q8NB12 490 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 PRSS33Q8NF86 280 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 OR9Q2Q8NGE9 314 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 OR5M9Q8NGP3 310 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 OR13C5Q8NGS8 318 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 PSMA8Q8TAA3 256 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms