RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 BPIFA3Q9BQP9 254 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 GTPBP2Q9BX10 602 aaKnown RBP4.35□□□□□ -1.71
CD44-202ENST00000278385 SPZ1Q9BXG8 430 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 TDRD1Q9BXT4 1180 aaKnown RBP4.35□□□□□ -1.71
CD44-202ENST00000278385 MRPL13Q9BYD1 178 aaKnown RBP4.35□□□□□ -1.71
CD44-202ENST00000278385 TPSD1Q9BZJ3 242 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 SIRPDQ9H106 197 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 SMOC2Q9H3U7 446 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 SLITRK6Q9H5Y7 841 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 AUNIPQ9H7T9 357 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 WDR76Q9H967 626 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 COG4Q9H9E3 785 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 CPNE5Q9HCH3 593 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 TRPC7Q9HCX4 862 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 TRIM36Q9NQ86 728 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 ENTPD7Q9NQZ7 604 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 RNF146Q9NTX7 359 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 ZCCHC3Q9NUD5 404 aaKnown RBP4.35□□□□□ -1.71
CD44-202ENST00000278385 PIGVQ9NUD9 493 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 WWOXQ9NZC7 414 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 PKD2L2Q9NZM6 624 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 VSX1Q9NZR4 365 aaPredicted RBP4.35□□□□□ -1.71
CD44-202ENST00000278385 EMC3Q9P0I2 261 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 VPS54Q9P1Q0 977 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 HSFX1Q9UBD0 423 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 UPB1Q9UBR1 384 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 IL20RAQ9UHF4 553 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 FZD10Q9ULW2 581 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 MRPS33Q9Y291 106 aaKnown RBP4.35□□□□□ -1.71
CD44-202ENST00000278385 FAM96BQ9Y3D0 163 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 Q9Y3F1 56 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 DMRT1Q9Y5R6 373 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 RNF215Q9Y6U7 377 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 SF3B1O75533 1304 aaKnown RBP eCLIP4.35□□□□□ -1.71
CD44-202ENST00000278385 RAD50Q92878 1312 aa4.35□□□□□ -1.71
CD44-202ENST00000278385 OR6C68A6NDL8 312 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 GABRR3A8MPY1 467 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 H3BQ06 376 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 ZNF701M0R085 212 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 TRDMT1O14717 391 aaKnown RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 POLR1CO15160 346 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 PPM1DO15297 605 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 YY2O15391 372 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CDH16O75309 829 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 SAP30O75446 220 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 OR6A2O95222 327 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CAVIN2O95810 425 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CLPTM1O96005 669 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 PGK1P00558 417 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 APOA1P02647 267 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 SERPINF2P08697 491 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 IGFBP1P08833 259 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 UMPSP11172 480 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 SLC2A4P14672 509 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 POU2F1P14859 743 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ANPEPP15144 967 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 FOSL2P15408 326 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ADRA1AP35348 466 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CHI3L1P36222 383 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 IER3P46695 156 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 FNTAP49354 379 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 NXPH1P58417 271 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 SNAP25P60880 206 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 IRX4P78413 519 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 RASGEF1BQ0VAM2 473 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 TRAP1Q12931 704 aaKnown RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 TRAF1Q13077 416 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 KRT33BQ14525 404 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 PCK2Q16822 640 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ST3GAL2Q16842 350 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 HNRNPA1L2Q32P51 320 aaKnown RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 ZNF829Q3KNS6 432 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 FAM153CQ494X1 144 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ASPRV1Q53RT3 343 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 AGBL2Q5U5Z8 902 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 DCAF12L2Q5VW00 463 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ZDHHC20Q5W0Z9 365 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 AADACL2Q6P093 401 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CYB5D1Q6P9G0 228 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ENPP7Q6UWV6 458 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ECHDC2Q86YB7 292 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 TBC1D10CQ8IV04 446 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 NSUN7Q8NE18 718 aaKnown RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 OR14L1PQ8NHC6 308 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 BBS10Q8TAM1 723 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CCDC12Q8WUD4 166 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 ASZ1Q8WWH4 475 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ASB10Q8WXI3 467 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 MCUR1Q96AQ8 359 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 OTUB1Q96FW1 271 aaPredicted RBP4.34□□□□□ -1.71
CD44-202ENST00000278385 C4orf36Q96KX1 117 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 GLT1D1Q96MS3 346 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CYTH2Q99418 400 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 NPY6RQ99463 290 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 FEVQ99581 238 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 CITED1Q99966 193 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ZNF559Q9BR84 538 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 TMEM79Q9BSE2 394 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 UBAC1Q9BSL1 405 aa4.34□□□□□ -1.71
CD44-202ENST00000278385 ALKBH7Q9BT30 221 aaPredicted RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms