RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 GAPDHSO14556 408 aaPredicted RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 PLD2O14939 933 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 SYN3O14994 580 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 SLITRK5O94991 958 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 IFNW1P05000 195 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 CYBAP13498 195 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 LHCGRP22888 699 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 GPC1P35052 558 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TUFMP49411 452 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 HOXC5Q00444 222 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 IRF3Q14653 427 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 DUSP7Q16829 419 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 CRTC2Q53ET0 693 aaPredicted RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 ZNF385BQ569K4 471 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 ZC3H12BQ5HYM0 836 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 LRIF1Q5T3J3 769 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 OR2G6Q5TZ20 316 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FAM124AQ86V42 546 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 C19orf18Q8NEA5 215 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TXNDC15Q96J42 360 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 RIOK2Q9BVS4 552 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 BTBD2Q9BX70 525 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 SP140LQ9H930 580 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 SSR3Q9UNL2 185 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 MRPS7Q9Y2R9 242 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 MEIOCA2RUB1 952 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FADS2P1A8MWK0 482 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FAM25AB3EWG3 89 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FAM25CB3EWG5 89 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FAM25GB3EWG6 89 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 PTTG1O95997 202 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 CYP17A1P05093 508 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 PTPN6P29350 595 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 MAGEA11P43364 429 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 GZMMP51124 257 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 HNRNPFP52597 415 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 LMAN2Q12907 356 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 MTA1Q13330 715 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 SLBPQ14493 270 aaKnown RBP eCLIP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TRIQKQ629K1 86 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 PPP2R2DQ66LE6 453 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 ASB18Q6ZVZ8 466 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 NLRP8Q86W28 1048 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TIGD4Q8IY51 512 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FAM9CQ8IZT9 166 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 LILRB4Q8NHJ6 448 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 WDR48Q8TAF3 677 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 BCL7CQ8WUZ0 217 aaPredicted RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FCGR1BQ92637 280 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 HDHD2Q9H0R4 259 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 NMNAT1Q9HAN9 279 aaPredicted RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 STARD7Q9NQZ5 370 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 FBXL12Q9NXK8 326 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 CRNNQ9UBG3 495 aaPredicted RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 Q9Y3F1 56 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TSC2P49815 1807 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TRBV4-1A0A0J9YWV2 114 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 A0A1W2PQL4 384 aaPredicted RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 ISPDA4D126 451 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TLR4O00206 839 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 NCR1O76036 304 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 VNN2O95498 520 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 IGLV3-27P01718 113 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 CXCR4P61073 352 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 SELENOWP63302 87 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 LSM11P83369 360 aaKnown RBP eCLIP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 B4GALNT1Q00973 533 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 PIN1Q13526 163 aaPredicted RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 C1DQ13901 141 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 TIMM50Q3ZCQ8 353 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 CEACAM20Q6UY09 585 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 DDX53Q86TM3 631 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 LHFPL3Q86UP9 236 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 GATAD2BQ8WXI9 593 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 LSM7Q9UK45 103 aaKnown RBP11.47□□□□□ -0.57
USHBP1-201ENST00000252597 RIMKLBQ9ULI2 386 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 ITM2BQ9Y287 266 aa11.47□□□□□ -0.57
USHBP1-201ENST00000252597 ZNF236Q9UL36 1845 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 GRXCR2A6NFK2 248 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 NEDD8-MDP1E9PL57 170 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 KPNA3O00505 521 aaPredicted RBP11.46□□□□□ -0.57
USHBP1-201ENST00000252597 CASKO14936 926 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 SEPT4O43236 478 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 URODP06132 367 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 GALTP07902 379 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 ANXA8P13928 327 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 ATP1B2P14415 290 aaPredicted RBP11.46□□□□□ -0.57
USHBP1-201ENST00000252597 CHMP24386 653 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 GSTM5P46439 218 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 AP1S1P61966 158 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 OLR1P78380 273 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 DSC1Q08554 894 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 IL18Q14116 193 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 SPHARQ15513 63 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 ATAT1Q5SQI0 421 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 PLET1Q6UQ28 207 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 OR7G3Q8NG95 312 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 DOK4Q8TEW6 326 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 ASZ1Q8WWH4 475 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms