RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SLC26A5P58743 744 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GNMTQ14749 295 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SMIM15Q7Z3B0 74 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 DCAF4L2Q8NA75 395 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 EDAQ92838 391 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PHF12Q96QT6 1004 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 MED28Q9H204 178 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 DHX33Q9H6R0 707 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 LOC105369274A0A096LPK9 316 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 FAM240BA0A1B0GVZ2 78 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 EFCAB9A8MZ26 197 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 FOXE1O00358 373 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GABRDO14764 452 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ZBTB22O15209 634 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CAPN5O15484 640 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PPM1BO75688 479 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 JUNP05412 331 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 UGT1A6P19224 532 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TCN2P20062 427 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 POU3F2P20265 443 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 HNRNPA2B1P22626 353 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ANKRD46Q86W74 232 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 RBM12BQ8IXT5 1001 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 OR4N4Q8N0Y3 316 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TMEM178AQ8NBL3 297 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SCAMP5Q8TAC9 235 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TMEM41AQ96HV5 264 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 BOD1Q96IK1 185 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PITX2Q99697 317 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 HCAR1Q9BXC0 346 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF355PQ9NSJ1 428 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SACM1LQ9NTJ5 587 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 MTMR10Q9NXD2 777 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 MED11Q9P086 117 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 EMC9Q9Y3B6 208 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 NSG1A0A0A6YYJ2 146 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 A0A1W2PRQ8 180 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 FUOMA2VDF0 154 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TISP43B9A030 160 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CSN2P05814 226 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 HK1P19367 917 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CRHR1P34998 444 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 RPL7AP62424 266 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 STEAP3Q658P3 488 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF613Q6PF04 617 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 KCTD18Q6PI47 426 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PRICKLE2Q7Z3G6 844 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TRAM1L1Q8N609 369 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 OR56A3Q8NH54 315 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PIWIL1Q96J94 861 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 C12orf42Q96LP6 360 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SEMA4AQ9H3S1 761 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ASTN1O14525 1302 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ICE1Q9Y2F5 2266 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF142P52746 1687 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CDC14CA4D256 554 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PLOD2O00469 737 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SCELO95171 688 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SFTPBP07988 381 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CD44P16070 742 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 AFF3P51826 1226 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 MCCD1P59942 119 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CSNK2A1P68400 391 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF92Q03936 586 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF33BQ06732 778 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 TMEM115Q12893 351 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SERTAD2Q14140 314 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 RSU1Q15404 277 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CHRNA6Q15825 494 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PLEKHS1Q5SXH7 462 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 OR13C3Q8NGS6 347 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 UTP23Q9BRU9 249 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SYT4Q9H2B2 425 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 C2orf42Q9NWW7 574 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 STOX2Q9P2F5 926 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 REV1Q9UBZ9 1251 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 LOC102725191A0A1B0GVB3 256 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SOWAHBA6NEL2 793 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SAGE2PA6NJ88 616 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 DISC1C4P0D8 188 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CLPXO76031 633 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 RPP14O95059 124 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 LATS1O95835 1130 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PAK4O96013 591 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 PRKCGP05129 697 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 INHBCP55103 352 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 EFR3AQ14156 821 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 SCGB2B2Q4G0G5 96 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 LIN52Q52LA3 116 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 MS4A13Q5J8X5 152 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GLYATQ6IB77 296 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 GRAMD2AQ8IUY3 354 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 S100PBPQ96BU1 408 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 FAM118AQ9NWS6 357 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CCDC59Q9P031 241 aaKnown RBP5.92□□□□□ -1.46
SCN1A-217ENST00000637988 CAPN6Q9Y6Q1 641 aa5.92□□□□□ -1.46
SCN1A-217ENST00000637988 A0A0G2JN53 185 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 OR5K3A6NET4 321 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 OR2AT4A6NND4 320 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MT-CO2P00403 227 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms