RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MAGEB17A8MXT2 336 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 C4orf51C9J302 202 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 KERAO60938 352 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 TBX6O95947 436 aaPredicted RBP18.12■□□□□ 0.49
CLN3-260ENST00000637578 FHP07954 510 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 PYGBP11216 843 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 MTHFD2P13995 350 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 CASP2P42575 452 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 PDK4Q16654 411 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 KRT71Q3SY84 523 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 MFSD4BQ5TF39 518 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 PLAG1Q6DJT9 500 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 KRT78Q8N1N4 520 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 AMER2Q8N7J2 671 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 RHEBL1Q8TAI7 183 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 DNAJB14Q8TBM8 379 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 ACMSDQ8TDX5 336 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 C19orf60Q96EN9 201 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 CD244Q9BZW8 370 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 ARGLU1Q9NWB6 273 aaPredicted RBP18.12■□□□□ 0.49
CLN3-260ENST00000637578 NUDT4Q9NZJ9 180 aa18.12■□□□□ 0.49
CLN3-260ENST00000637578 ZNF490Q9ULM2 529 aaPredicted RBP18.12■□□□□ 0.49
CLN3-260ENST00000637578 PRRC2CQ9Y520 2896 aaKnown RBP18.12■□□□□ 0.49
CLN3-260ENST00000637578 IGHV3-20A0A0C4DH32 117 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 LRIT2A6NDA9 550 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 CLGNO14967 610 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 CLEC3AO75596 197 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 ITGAMP11215 1152 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 COL6A2P12110 1019 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 CD22P20273 847 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 HNF4AP41235 474 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 UQCRFS1P47985 274 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 RAB8AP61006 207 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 ACAP2Q15057 778 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 TBCCQ15814 346 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 ADPRMQ3LIE5 342 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 B3GNTL1Q67FW5 361 aaPredicted RBP18.11■□□□□ 0.49
CLN3-260ENST00000637578 LINC00696Q6ZRV3 163 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 LRRC70Q7Z2Q7 622 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 VN1R5Q7Z5H4 357 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 CISD2Q8N5K1 135 aaKnown RBP18.11■□□□□ 0.49
CLN3-260ENST00000637578 UBTD2Q8WUN7 234 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 HAS2Q92819 552 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 PTCD3Q96EY7 689 aaKnown RBP18.11■□□□□ 0.49
CLN3-260ENST00000637578 PTGFRNQ9P2B2 879 aa18.11■□□□□ 0.49
CLN3-260ENST00000637578 TCP11X1B4DZS4 312 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 CDC123O75794 336 aaPredicted RBP18.1■□□□□ 0.49
CLN3-260ENST00000637578 WFS1O76024 890 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 GNLYP22749 145 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 TSFMP43897 325 aaKnown RBP18.1■□□□□ 0.49
CLN3-260ENST00000637578 STXBP1P61764 594 aaKnown RBP18.1■□□□□ 0.49
CLN3-260ENST00000637578 OLR1P78380 273 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 UBAP2LQ14157 1087 aaKnown RBP18.1■□□□□ 0.49
CLN3-260ENST00000637578 DOC2AQ14183 400 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 CASP8Q14790 479 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 ABRAXAS2Q15018 415 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 TLR1Q15399 786 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 NSDHLQ15738 373 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 TOR1AIP1Q5JTV8 583 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 CEP85LQ5SZL2 805 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 H3F3CQ6NXT2 135 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 KLC3Q6P597 504 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 LRIG3Q6UXM1 1119 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 SH2D5Q6ZV89 423 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 EXT2Q93063 718 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 MS4A6EQ96DS6 147 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 EFCAB11Q9BUY7 163 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 RHBGQ9H310 441 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 ASF1BQ9NVP2 202 aa18.1■□□□□ 0.49
CLN3-260ENST00000637578 RP1L1Q8IWN7 2480 aaPredicted RBP18.1■□□□□ 0.49
CLN3-260ENST00000637578 UBXN8O00124 270 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 SEC24DO94855 1032 aaPredicted RBP18.09■□□□□ 0.49
CLN3-260ENST00000637578 S100BP04271 92 aaPredicted RBP18.09■□□□□ 0.49
CLN3-260ENST00000637578 JAK1P23458 1154 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 HNRNPH1P31943 449 aaKnown RBP18.09■□□□□ 0.49
CLN3-260ENST00000637578 ZNF169Q14929 603 aaPredicted RBP18.09■□□□□ 0.49
CLN3-260ENST00000637578 TSNAXIP1Q2TAA8 658 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 SIRT6Q8N6T7 355 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 SNX31Q8N9S9 440 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 CATSPER1Q8NEC5 780 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 GAL3ST3Q96A11 431 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 RBCK1Q9BYM8 510 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 RNF32Q9H0A6 362 aa18.09■□□□□ 0.49
CLN3-260ENST00000637578 UQCRHLA0A096LP55 91 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 KLK8O60259 260 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 CCNT2O60583 730 aaKnown RBP18.08■□□□□ 0.49
CLN3-260ENST00000637578 UQCRHP07919 91 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 RNH1P13489 461 aaKnown RBP18.08■□□□□ 0.49
CLN3-260ENST00000637578 LAPTM5Q13571 262 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 SFT2D3Q587I9 215 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 XKR6Q5GH73 641 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 TECRLQ5HYJ1 363 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 RPUSD3Q6P087 351 aaKnown RBP18.08■□□□□ 0.49
CLN3-260ENST00000637578 QSOX2Q6ZRP7 698 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 TRABD2AQ86V40 505 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 CA13Q8N1Q1 262 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 FAM26EQ8N5C1 309 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 M1APQ8TC57 530 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 TSLPQ969D9 159 aa18.08■□□□□ 0.49
CLN3-260ENST00000637578 QRFPRQ96P65 431 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms