RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TRAF4Q9BUZ4 470 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 UFSP2Q9NUQ7 469 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 CBY1Q9Y3M2 126 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 LRIT2A6NDA9 550 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 LDB2O43679 373 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 EDNRAP25101 427 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 PPP2R1BP30154 601 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF132P52740 706 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 PTP4A2Q12974 167 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 SCARB2Q14108 478 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 OR4D1Q15615 310 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 SPANXN4Q5MJ08 99 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 PLEKHH3Q7Z736 793 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 ATCAYQ86WG3 371 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 SLC35B2Q8TB61 432 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 CNOT9Q92600 299 aaKnown RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 ABCG5Q9H222 651 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF226Q9NYT6 803 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 URGCP-MRPS24S4R325 110 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 ABCC6O95255 1503 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 REM1O75628 298 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 HTR7P34969 479 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 FAUP35544 74 aaKnown RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 DSC2Q02487 901 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 SRSF11Q05519 484 aaKnown RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 RGS1Q08116 209 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 TSPAN33Q86UF1 283 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 SIAH3Q8IW03 269 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 OR9Q2Q8NGE9 314 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 RAB8BQ92930 207 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 CREB3L1Q96BA8 519 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 FEVQ99581 238 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 CACNG6Q9BXT2 260 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 FOLH1BQ9HBA9 442 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 PXMP2Q9NR77 195 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 A0A1W2PP18 115 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 RPS10-NUDT3A0A1W2PQS6 291 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 J3KR12 359 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 RPS10P46783 165 aaKnown RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 RPS25P62851 125 aaKnown RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 HTRA4P83105 476 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 GTF2BQ00403 316 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 SUSD1Q6UWL2 747 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 TMPRSS9Q7Z410 1059 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 TSPEARQ8WU66 669 aa4.87□□□□□ -1.63
VPS13D-214ENST00000620676 TNPO3Q9Y5L0 923 aaKnown RBP4.87□□□□□ -1.63
VPS13D-214ENST00000620676 DDTLA6NHG4 134 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 CELP19835 753 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 S100PP25815 95 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 SOX2P48431 317 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 RHOAP61586 193 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 CNTN2Q02246 1040 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 MBTD1Q05BQ5 628 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 DUSP4Q13115 394 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 MPPE1Q53F39 396 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 PAGE3Q5JUK9 113 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 EXOSC6Q5RKV6 272 aaKnown RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 BEST3Q8N1M1 668 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 PIGXQ8TBF5 258 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 NSMAFQ92636 917 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 PYCR2Q96C36 320 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ZDHHC15Q96MV8 337 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 PUS1Q9Y606 427 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 TNS3Q68CZ2 1445 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 PRSS51A0A1B0GVH4 220 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 LRRN3E7EW58 273 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 SLC33A1O00400 549 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ARHGAP33O14559 1287 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 RAD1O60671 282 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 MMP20O60882 483 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 POU3F3P20264 500 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ALKBH1Q13686 389 aaKnown RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ABHD15Q6UXT9 468 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 MYRFLQ96LU7 910 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 IER2Q9BTL4 223 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 LRRN3Q9H3W5 708 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 MTG2Q9H4K7 406 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF385DQ9H6B1 395 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 NYAP2Q9P242 653 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ENOPH1Q9UHY7 261 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 KCNK2O95069 426 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 TLE2Q04725 743 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF616Q08AN1 781 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 RHEBQ15382 184 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 PAPD5Q8NDF8 572 aaKnown RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 SLAMF9Q96A28 289 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ASB7Q9H672 318 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 TDP1Q9NUW8 608 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 IRAK3Q9Y616 596 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 CTU1Q7Z7A3 348 aaKnown RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 MAP4K3Q8IVH8 894 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 DCP1BQ8IZD4 617 aaKnown RBP4.86□□□□□ -1.63
VPS13D-214ENST00000620676 OR10K1Q8NGX5 313 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 ZFAND1Q8TCF1 268 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 RHOVQ96L33 236 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 AIF1LQ9BQI0 150 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 DTLQ9NZJ0 730 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 FNIP2Q9P278 1114 aa4.86□□□□□ -1.63
VPS13D-214ENST00000620676 IKZF2Q9UKS7 526 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms