RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ABCC13Q9NSE7 274 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 TAS2R16Q9NYV7 291 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 ABHD14A-ACY1A0A1B0GW23 586 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 MYBPHLA2RUH7 354 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 ATP6V1G2-DDX39BF2Z307 99 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 H3BM21 787 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 EFCAB14O75071 495 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 EBLN1P0CF75 366 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 HLA-FP30511 346 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 CRYBB2P43320 205 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 C1DQ13901 141 aaKnown RBP10.4□□□□□ -0.74
UPF3A-212ENST00000619079 IHHQ14623 411 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 DUOXA1Q1HG43 343 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 TCTN1Q2MV58 587 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 TYW3Q6IPR3 259 aaKnown RBP10.4□□□□□ -0.74
UPF3A-212ENST00000619079 ANKRD54Q6NXT1 300 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 KLHL17Q6TDP4 642 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 CHRDL2Q6WN34 429 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 C16orf59Q7L2K0 433 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 ZNF551Q7Z340 670 aaPredicted RBP10.4□□□□□ -0.74
UPF3A-212ENST00000619079 ANKRD46Q86W74 232 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 SLC5A8Q8N695 610 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 CLHC1Q8NHS4 586 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 CREB3L1Q96BA8 519 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 SENP8Q96LD8 212 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 MND1Q9BWT6 205 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 MIXL1Q9H2W2 232 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 KLK14Q9P0G3 267 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 LRFN2Q9ULH4 789 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 HS3ST4Q9Y661 456 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 SCN5AQ14524 2016 aa10.4□□□□□ -0.74
UPF3A-212ENST00000619079 MANBAO00462 879 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 FFAR3O14843 346 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 GPR42O15529 346 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 FFAR2O15552 330 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 LYRM1O43325 122 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 NIPSNAP2O75323 286 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 GLUD1P00367 558 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 IFNA7P01567 189 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 TPOP07202 933 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 SDC2P34741 201 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 CDKN2CP42773 168 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PPP3R1P63098 170 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 KCNJ10P78508 379 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 IL10RBQ08334 325 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 KCNC3Q14003 757 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF267Q14586 743 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 HKDC1Q2TB90 917 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 CLLU1Q5K131 121 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 ARTNQ5T4W7 220 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 GARNL3Q5VVW2 1013 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 BRAT1Q6PJG6 821 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 SLC24A5Q71RS6 500 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PRSS42Q7Z5A4 293 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 COMMD7Q86VX2 200 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 KLHL6Q8WZ60 621 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 TRMT61AQ96FX7 289 aaKnown RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 NECTIN4Q96NY8 510 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 C2orf49Q9BVC5 232 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 NT5DC2Q9H857 520 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 FAM105AQ9NUU6 356 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM30AQ9NV96 361 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF224Q9NZL3 707 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 LSM2Q9Y333 95 aaKnown RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 CDRT1O95170 752 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 RAF1P04049 648 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PRSS56P0CW18 603 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 ENGP17813 658 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PCSK1P29120 753 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 KIR3DL1P43629 444 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 SOX9P48436 509 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PIK3CGP48736 1102 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 MLLT11Q13015 90 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 HNRNPA0Q13151 305 aaKnown RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 SLC14A1Q13336 389 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 SF3A2Q15428 464 aaKnown RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 TAF1AQ15573 450 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 GRK1Q15835 563 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 MICAQ29983 383 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 C9orf50Q5SZB4 431 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 NADSYN1Q6IA69 706 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 GET4Q7L5D6 327 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PTOV1Q86YD1 416 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 SLC37A3Q8NCC5 494 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 USP7Q93009 1102 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PSMG2Q969U7 264 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 VWCEQ96DN2 955 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 DOHHQ9BU89 302 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 MED18Q9BUE0 208 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 ZYG11BQ9C0D3 744 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 PPIL3Q9H2H8 161 aaKnown RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM248Q9NWD8 314 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 CXXC1Q9P0U4 656 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-212ENST00000619079 CORO2BQ9UQ03 480 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 TET1Q8NFU7 2136 aa10.39□□□□□ -0.75
UPF3A-212ENST00000619079 A0A1B0GVM2 712 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 C2orf81A6NN90 581 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 MOCS2O96007 188 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 FHP07954 510 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms