RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 OCA2Q04671 838 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 TRAF3Q13114 568 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ACAP2Q15057 778 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 NSDHLQ15738 373 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 RBBP7Q16576 425 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 UNC50Q53HI1 259 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 SULT1C3Q6IMI6 304 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ZCCHC23Q6ZST2 131 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 CUZD1Q86UP6 607 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 OR4F6Q8NGB9 312 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF473Q8WTR7 871 aaKnown RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ISL2Q96A47 359 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 TSPAN17Q96FV3 270 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 HAUS8Q9BT25 410 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 REXO4Q9GZR2 422 aaKnown RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 TSPAN10Q9H1Z9 355 aaPredicted RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 SLC26A1Q9H2B4 701 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 NMRAL1Q9HBL8 299 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 PRM3Q9NNZ6 103 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 OPTCQ9UBM4 332 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 GIMAP2Q9UG22 337 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 MAP1AP78559 2803 aaPredicted RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 FREM3P0C091 2139 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 TMEM233B4DJY2 109 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 G3V2L1 256 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 KLK8O60259 260 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 OR4F21O95013 312 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 NSA2O95478 260 aaKnown RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 HEXBP07686 556 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 SLC35G6P0C7Q6 338 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 PHBP35232 272 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ATP6V0D1P61421 351 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 CDKL1Q00532 357 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 PRSS53Q2L4Q9 553 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 SLC6A19Q695T7 634 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 APLFQ8IW19 511 aaPredicted RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 CISD2Q8N5K1 135 aaKnown RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 AGR3Q8TD06 166 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 AENQ8WTP8 325 aaKnown RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 CNDP1Q96KN2 507 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ANKHQ9HCJ1 492 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF223Q9UK11 482 aaPredicted RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 K7EPI3 171 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 SNRPAP09012 282 aaKnown RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 PRR35P0CG20 571 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 RFC3P40938 356 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 HNRNPH2P55795 449 aaKnown RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 DUSP2Q05923 314 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 C19orf57Q0VDD7 668 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 FAM53BQ14153 422 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ZRSR2Q15696 482 aaKnown RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 FAM83EQ2M2I3 478 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 LACTB2Q53H82 288 aaPredicted RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 DESI1Q6ICB0 168 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 JMJD6Q6NYC1 403 aaPredicted RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ABHD17CQ6PCB6 329 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ANKRD37Q7Z713 158 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 GABPB2Q8TAK5 448 aaPredicted RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 PTCHD1Q96NR3 888 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 AIF1LQ9BQI0 150 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 SARGQ9BW04 601 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 TEX10Q9NXF1 929 aaPredicted RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ATG4BQ9Y4P1 393 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 MAST4O15021 2626 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CELSR1Q9NYQ6 3014 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 RRP9O43818 475 aaKnown RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CEACAM4O75871 244 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CCNDBP1O95273 360 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ONECUT2O95948 504 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 HBQ1P09105 142 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 C8orf89P0DMQ9 161 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 KRT4P19013 534 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 HNMTP50135 292 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 LIM2P55344 173 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 HMGCS1Q01581 520 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 SFT2D3Q587I9 215 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CDYL2Q8N8U2 506 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CAMKVQ8NCB2 501 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ATL1Q8WXF7 558 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 THAP4Q8WY91 577 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 QRFPRQ96P65 431 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 SIGLEC12Q96PQ1 595 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ENAMQ9NRM1 1142 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ASF1BQ9NVP2 202 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 NUDT4Q9NZJ9 180 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 KCMF1Q9P0J7 381 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 MAP10Q9P2G4 905 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CPAMD8Q8IZJ3 1885 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 A0A087X1B8 175 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 PABPN1LA6NDY0 278 aaKnown RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF839A8K0R7 811 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CYR61O00622 381 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 PGRMC2O15173 223 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 SLU7O95391 586 aaKnown RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 ACPPP15309 386 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 GRK3P35626 688 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 MPP2Q14168 576 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 EIF2S3LQ2VIR3 472 aaKnown RBP5.35□□□□□ -1.55
CPNE3-208ENST00000614678 BTBD16Q32M84 506 aa5.35□□□□□ -1.55
CPNE3-208ENST00000614678 CLEC6AQ6EIG7 209 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms