RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 STXBP1P61764 594 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 GPLD1P80108 840 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 FOXM1Q08050 763 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MAPKAPK3Q16644 382 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 PRSS53Q2L4Q9 553 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 PGS1Q32NB8 556 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 PLA2G2CQ5R387 149 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MRM1Q6IN84 353 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 TCEAL6Q6IPX3 200 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MSANTD1Q6ZTZ1 278 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 HPS6Q86YV9 775 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 TMEM132CQ8N3T6 1108 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 FBXW8Q8N3Y1 598 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 UTP15Q8TED0 518 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 STARD8Q92502 1023 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 TCEAL3Q969E4 200 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 CCDC74AQ96AQ1 378 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 QRFPRQ96P65 431 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 TBCDQ9BTW9 1192 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MAPRE3Q9UPY8 281 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 WBP11Q9Y2W2 641 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 PCDHGA5Q9Y5G8 931 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 TRBV5-3A0A0A0MS03 114 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 H0YHG0 523 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 ENGP17813 658 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 ATP5A1P25705 553 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 SSR2P43308 183 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 TSFMP43897 325 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 NUBP1P53384 320 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 RAB8AP61006 207 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 RGS1Q08116 209 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 C2orf80Q0P641 193 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MPEG1Q2M385 716 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 GUSBP11Q6P575 273 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 ZC3H14Q6PJT7 736 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 SPRED1Q7Z699 444 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 DHDDSQ86SQ9 333 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 GPR180Q86V85 440 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MSRB3Q8IXL7 192 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 ZCCHC7Q8N3Z6 543 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 ARHGEF39Q8N4T4 335 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 ACOT4Q8N9L9 421 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 CAMKVQ8NCB2 501 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 SRFBP1Q8NEF9 429 aaKnown RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 OR8K5Q8NH50 307 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 WDR60Q8WVS4 1066 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 GAL3ST3Q96A11 431 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 ZDHHC12Q96GR4 267 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 CD180Q99467 661 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 CHRNA10Q9GZZ6 450 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 DENND2DQ9H6A0 471 aaPredicted RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 SPAG4Q9NPE6 437 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 SLC6A13Q9NSD5 602 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 GMEB2Q9UKD1 530 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 PCDHA9Q9Y5H5 950 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MN1Q10571 1320 aaPredicted RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 EME2A4GXA9 379 aaPredicted RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 TNFRSF10AO00220 468 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 ZNF888P0CJ79 500 aaPredicted RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 HPCAL1P37235 193 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 SLC7A2P52569 658 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 TRA2BP62995 288 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 PLIN5Q00G26 463 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 KLC1Q07866 573 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 NR0B2Q15466 257 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 CPTPQ5TA50 214 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 TRIM40Q6P9F5 258 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 ANKRD46Q86W74 232 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 SLC15A3Q8IY34 581 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 EID2Q8N6I1 236 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 Q8N9G6 341 aaPredicted RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 TCTN2Q96GX1 697 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 INPP5KQ9BT40 448 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 TRIM8Q9BZR9 551 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 PAIP1Q9H074 479 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 KCNH6Q9H252 994 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 CMTM6Q9NX76 183 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 TEX10Q9NXF1 929 aaPredicted RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 SLC25A37Q9NYZ2 338 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 VAPAQ9P0L0 249 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 TMEM9Q9P0T7 183 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 SEMA5BQ9P283 1151 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 CD300AQ9UGN4 299 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 MRPS2Q9Y399 296 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 ASB4Q9Y574 426 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 SCN2AQ99250 2005 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 ARHGAP10A1A4S6 786 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 PRORSD1PA6NEY8 169 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 PRR33A8MZF0 331 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 NME4O00746 187 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 MAP3K7O43318 606 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 DUX1O43812 170 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 CDKN2CP42773 168 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 GSTM5P46439 218 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 DEFB110Q30KQ9 67 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 AMZ1Q400G9 498 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 MANEAQ5SRI9 462 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 PERM1Q5SV97 790 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 LRIF1Q5T3J3 769 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 NANOGP8Q6NSW7 305 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms