RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CCT8L2Q96SF2 557 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 ELAC2Q9BQ52 826 aaKnown RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 POLR1BQ9H9Y6 1135 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 CLK4Q9HAZ1 481 aaKnown RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 TCF7L2Q9NQB0 619 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 SPEGQ15772 3267 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 A0A0A6YYD5 115 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 A0A0G2JN53 185 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 A0A1B0GX78 115 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 H0YIG0 161 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 SNX3O60493 162 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 CPNE3O75131 537 aaKnown RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 MYO1DO94832 1006 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 FAM107AO95990 144 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 KLK1P06870 262 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 IL1RNP18510 177 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 TIA1P31483 386 aaKnown RBP eCLIP13.61□□□□□ -0.23
UPF1-211ENST00000600868 SSR2P43308 183 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 AVPR1BP47901 424 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 ARFIP2P53365 341 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 ERVK-8P63133 956 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 RPL38P63173 70 aaKnown RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 RAE1P78406 368 aaKnown RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 BTN3A2P78410 334 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 LSM12Q3MHD2 195 aaKnown RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 TMEM164Q5U3C3 297 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 NXNQ6DKJ4 435 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 NOXRED1Q6NXP6 359 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 PRMT9Q6P2P2 845 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 FOXR1Q6PIV2 292 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 IGF2-ASQ6U949 168 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 TTLL10Q6ZVT0 673 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 PRSS41Q7RTY9 318 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 SPATA21Q7Z572 469 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 SPATA19Q7Z5L4 167 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 PIGWQ7Z7B1 504 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 NUDT13Q86X67 352 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 PDSS2Q86YH6 399 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 MARCH9Q86YJ5 346 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 ACOT4Q8N9L9 421 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 FNDC5Q8NAU1 212 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 PROKR1Q8TCW9 393 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 C10orf82Q8WW14 230 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 PMEPA1Q969W9 287 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 SERINC2Q96SA4 455 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 SORBS1Q9BX66 1292 aaKnown RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 NPLQ9BXD5 320 aaPredicted RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 TMEM120AQ9BXJ8 343 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 SLC7A5P2Q9GIP4 190 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 COPS7BQ9H9Q2 264 aaPredicted RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 TXLNGQ9NUQ3 528 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 ASIC5Q9NY37 505 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 DHCR7Q9UBM7 475 aaKnown RBP13.61□□□□□ -0.23
UPF1-211ENST00000600868 GIMAP2Q9UG22 337 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 MCM8Q9UJA3 840 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 CDC14AQ9UNH5 594 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 NAALAD2Q9Y3Q0 740 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 B3GALT1Q9Y5Z6 326 aa13.61□□□□□ -0.23
UPF1-211ENST00000600868 A0A0A6YYC8 382 aaPredicted RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 C9orf172C9J069 976 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 I3L1I5 382 aaPredicted RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 NVLO15381 856 aaKnown RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 B3GALT2O43825 422 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 PCDH7O60245 1069 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 EEDO75530 441 aaKnown RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 TNFSF15O95150 251 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 B3GALT4O96024 378 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 NTRK1P04629 796 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 PCSK2P16519 638 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 ALAS2P22557 587 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 MAPK1P28482 360 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 TPP2P29144 1249 aaPredicted RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 RORAP35398 523 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 GSTM5P46439 218 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 ID4P47928 161 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 TRA2BP62995 288 aaKnown RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 GABREP78334 506 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 CCNYL2Q5T2Q4 361 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 MRM1Q6IN84 353 aaKnown RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 AMER3Q8N944 861 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 SLC38A9Q8NBW4 561 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 OR9A4Q8NGU2 314 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 LRFN5Q96NI6 719 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 SLC46A1Q96NT5 459 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 GBP5Q96PP8 586 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 NRSN2Q9GZP1 204 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 RABEP2Q9H5N1 569 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 NOP53Q9NZM5 478 aaKnown RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 NDOR1Q9UHB4 597 aa13.6□□□□□ -0.23
UPF1-211ENST00000600868 EIF3LQ9Y262 564 aaKnown RBP13.6□□□□□ -0.23
UPF1-211ENST00000600868 ARHGAP10A1A4S6 786 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 SGK494L7N484 410 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 KIAA0754O94854 1291 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 ONECUT2O95948 504 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 ANXA4P09525 319 aaPredicted RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 PRPS2P11908 318 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 ZNF28P17035 718 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 CERS1P27544 350 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 HOXD11P31277 338 aaPredicted RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 SF3A3Q12874 501 aaKnown RBP eCLIP13.59□□□□□ -0.235e-7■■■□□ 14.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms