RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ROPN1BQ9BZX4 212 aaPredicted RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 OR51B5Q9H339 312 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 ROPN1Q9HAT0 212 aaPredicted RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 RRAGDQ9NQL2 400 aaPredicted RBP14.35□□□□□ -0.11
LIG1-219ENST00000600055 DMRT3Q9NQL9 472 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 PRDM7Q9NQW5 492 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 LGALS13Q9UHV8 139 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 PCDHGA11Q9Y5H2 935 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 FAM208BQ5VWN6 2430 aa14.35□□□□□ -0.11
LIG1-219ENST00000600055 IGHV3-20A0A0C4DH32 117 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 PLIN3O60664 434 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 B4GALT2O60909 372 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 SUPT7LO94864 414 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 FHP07954 510 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 COX6A1P12074 109 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 CERS1P27544 350 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 CCT5P48643 541 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 PRKAA2P54646 552 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 RPS13P62277 151 aaKnown RBP14.34□□□□□ -0.11
LIG1-219ENST00000600055 RHAGQ02094 409 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 Q0VFX4 171 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 LACTB2Q53H82 288 aaPredicted RBP14.34□□□□□ -0.11
LIG1-219ENST00000600055 NIPAL1Q6NVV3 410 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 LETMD1Q6P1Q0 360 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 ZYG11AQ6WRX3 759 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 ZNF793Q6ZN11 406 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 MILR1Q7Z6M3 343 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 TRABD2AQ86V40 505 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 PTRH1Q86Y79 214 aaKnown RBP14.34□□□□□ -0.11
LIG1-219ENST00000600055 PARP9Q8IXQ6 854 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 GALNT16Q8N428 558 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 CLEC1AQ8NC01 280 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 OR4F6Q8NGB9 312 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 WDR20Q8TBZ3 569 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 PPP4R1Q8TF05 950 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 TSLPQ969D9 159 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 TBC1D20Q96BZ9 403 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 OR1F2PQ96R84 312 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 NUDT9Q9BW91 350 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 SORBS1Q9BX66 1292 aaKnown RBP14.34□□□□□ -0.11
LIG1-219ENST00000600055 ZNF160Q9HCG1 818 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 ATP13A2Q9NQ11 1180 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 ZNF225Q9UK10 706 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 GRID1Q9ULK0 1009 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 CACNA1GO43497 2377 aa14.34□□□□□ -0.11
LIG1-219ENST00000600055 LOC102723996A0A087X1L8 192 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 IGHV1-45A0A0A0MS14 117 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 MAGEB17A8MXT2 336 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 ETHE1O95571 254 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 HPP00738 406 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 C8orf89P0DMQ9 161 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 MYL2P10916 166 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 RNH1P13489 461 aaKnown RBP14.33□□□□□ -0.12
LIG1-219ENST00000600055 IMPDH1P20839 514 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 IL10P22301 178 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 SERPINB1P30740 379 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 PIK3CBP42338 1070 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 MTTPP55157 894 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 BTG2P78543 158 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 CLCQ05315 142 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 ZNF844Q08AG5 666 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 PCOLCEQ15113 449 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 CCDC153Q494R4 210 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 COLEC12Q5KU26 742 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 DEPDC1Q5TB30 811 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 KHDRBS2Q5VWX1 349 aaKnown RBP14.33□□□□□ -0.12
LIG1-219ENST00000600055 TCTN3Q6NUS6 607 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 SLC22A9Q8IVM8 553 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 SRRM1Q8IYB3 904 aaKnown RBP14.33□□□□□ -0.12
LIG1-219ENST00000600055 METTL21AQ8WXB1 218 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 CMTM7Q96FZ5 175 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 TMEM109Q9BVC6 243 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 CLK4Q9HAZ1 481 aaKnown RBP14.33□□□□□ -0.12
LIG1-219ENST00000600055 ADGRE2Q9UHX3 823 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 TSC22D4Q9Y3Q8 395 aa14.33□□□□□ -0.12
LIG1-219ENST00000600055 NSG1A0A0A6YYJ2 146 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 PSMD12O00232 456 aaPredicted RBP14.32□□□□□ -0.12
LIG1-219ENST00000600055 B3GALT2O43825 422 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 SPAG7O75391 227 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 OR4F21O95013 312 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 OTCP00480 354 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 CELA2AP08217 269 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 CREB1P16220 341 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 ITGA3P26006 1051 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 HPDP32754 393 aaPredicted RBP14.32□□□□□ -0.12
LIG1-219ENST00000600055 TGM3Q08188 693 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 AIMP2Q13155 320 aaKnown RBP14.32□□□□□ -0.12
LIG1-219ENST00000600055 KRT71Q3SY84 523 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 TMEM35AQ53FP2 167 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 SGO1Q5FBB7 561 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 TTC19Q6DKK2 380 aaPredicted RBP14.32□□□□□ -0.12
LIG1-219ENST00000600055 ASB18Q6ZVZ8 466 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 CHSY3Q70JA7 882 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 NDUFAF7Q7L592 441 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 CPEB2Q7Z5Q1 589 aaKnown RBP14.32□□□□□ -0.12
LIG1-219ENST00000600055 ANKRD37Q7Z713 158 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 BANPQ8N9N5 519 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 CCDC63Q8NA47 563 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 TMEM52Q8NDY8 209 aa14.32□□□□□ -0.12
LIG1-219ENST00000600055 PLPP5Q8NEB5 264 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms