RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CDKL1Q00532 357 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 CATSPEREQ5SY80 951 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 ZNF781Q8N8C0 355 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 TP53INP1Q96A56 240 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 TMEM68Q96MH6 324 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 POLR2J2Q9GZM3 115 aaKnown RBP19.74■□□□□ 0.75
UPF1-207ENST00000599848 AASSQ9UDR5 926 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 PARP4Q9UKK3 1724 aaKnown RBP19.74■□□□□ 0.75
UPF1-207ENST00000599848 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 GPR89AB7ZAQ6 455 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 GPR89BP0CG08 455 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 C17orf99Q6UX52 265 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 IL17RCQ8NAC3 791 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 ATOH1Q92858 354 aaPredicted RBP19.74■□□□□ 0.75
UPF1-207ENST00000599848 FN3KQ9H479 309 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 GPRC5BQ9NZH0 403 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 MGAT4BQ9UQ53 548 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 BPNT1O95861 308 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 CYP1B1Q16678 543 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 CGREF1Q99674 301 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 SMG9Q9H0W8 520 aaKnown RBP19.74■□□□□ 0.75
UPF1-207ENST00000599848 BRD7Q9NPI1 651 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 SACM1LQ9NTJ5 587 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 CLPXO76031 633 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 MMP2P08253 660 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 LRRC25Q8N386 305 aaPredicted RBP19.74■□□□□ 0.75
UPF1-207ENST00000599848 RAB39BQ96DA2 213 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 HBEGFQ99075 208 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 ACSS2Q9NR19 701 aa19.74■□□□□ 0.75
UPF1-207ENST00000599848 MID1O15344 667 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 KCNC4Q03721 635 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 TYSND1Q2T9J0 566 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 GLT8D1Q68CQ7 371 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 USP43Q70EL4 1123 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 NMUR2Q9GZQ4 415 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 ABCD2Q9UBJ2 740 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 RCCD1A6NED2 376 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 BLOC1S5-TXNDC5H3BN57 136 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 POLR1CO15160 346 aaPredicted RBP19.73■□□□□ 0.75
UPF1-207ENST00000599848 BMP6P22004 513 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 RORCP51449 518 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 DPY19L3Q6ZPD9 716 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 KCTD7Q96MP8 289 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 LENG8Q96PV6 779 aaPredicted RBP19.73■□□□□ 0.75
UPF1-207ENST00000599848 RTP3Q9BQQ7 232 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 FGFBP2Q9BYJ0 223 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 CD320Q9NPF0 282 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 BLACEA4D250 179 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 LOC730098B7Z3J9 87 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 PHYHO14832 338 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 OR7A10O76100 309 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 F8A1P23610 371 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 ARL3P36405 182 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 GNG2P59768 71 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 CSTF1Q05048 431 aaKnown RBP19.73■□□□□ 0.75
UPF1-207ENST00000599848 LANCL3Q6ZV70 420 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 STYXL1Q9Y6J8 313 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 KIR2DS5A0A0G2JLQ3 304 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 A0A0G2JNG1 304 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 KIR2DS3K7RE56 304 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 CDC40O60508 579 aaKnown RBP eCLIP19.73■□□□□ 0.75
UPF1-207ENST00000599848 CBFA2T3O75081 653 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 GGT2P36268 569 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 MVKQ03426 396 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 EMX2Q04743 252 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 KIR2DS5Q14953 304 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 RBM48Q5RL73 367 aaKnown RBP19.73■□□□□ 0.75
UPF1-207ENST00000599848 HMBOX1Q6NT76 420 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 ZNF280BQ86YH2 543 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 RADILQ96JH8 1075 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 ZNF358Q9NW07 568 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 DLGAP4Q9Y2H0 992 aa19.73■□□□□ 0.75
UPF1-207ENST00000599848 A8MT66 165 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 OAZ2O95190 189 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 HLA-DPB1P04440 258 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 RABGGTBP53611 331 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 ARG2P78540 354 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 TGFBR3Q03167 851 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 TDGQ13569 410 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 OR4F3Q6IEY1 312 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 ZNF709Q8N972 641 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 LRRC57Q8N9N7 239 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 DDIT4LQ96D03 193 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 PROM1O43490 865 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 IFI30P13284 250 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 POU2F1P14859 743 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 IDH3AP50213 366 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 PRKCDQ05655 676 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 FIBINQ8TAL6 211 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 GMLQ99445 158 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 CIB1Q99828 191 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 ABCB9Q9NP78 766 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 BAZ2BQ9UIF8 2168 aaKnown RBP19.72■□□□□ 0.75
UPF1-207ENST00000599848 ARPC2O15144 300 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 TGM5O43548 720 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 GATMP50440 423 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 MRPS21P82921 87 aaKnown RBP19.72■□□□□ 0.75
UPF1-207ENST00000599848 TRAM1Q15629 374 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 HSF5Q4G112 596 aaPredicted RBP19.72■□□□□ 0.75
UPF1-207ENST00000599848 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.72■□□□□ 0.753e-7■■■■■ 232.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms