RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 C4orf51C9J302 202 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 CLDN4O14493 209 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 CLGNO14967 610 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 TP73O15350 636 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 B3GALT2O43825 422 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 MYO1DO94832 1006 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 S100BP04271 92 aaPredicted RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 SMIM10L1P0DMW3 83 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 ABOP16442 354 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 STMN1P16949 149 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 ZNF24P17028 368 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 SLC6A12P48065 614 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 CLCN2P51788 898 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 MLF1P58340 268 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 TGM3Q08188 693 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 SLC13A2Q13183 592 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 RCN2Q14257 317 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 C3AR1Q16581 482 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 C18orf21Q32NC0 220 aaPredicted RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 TRIM40Q6P9F5 258 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 BNC2Q6ZN30 1099 aaPredicted RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 SLCO4C1Q6ZQN7 724 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 MAATS1Q7Z4T9 603 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 GPSM1Q86YR5 675 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 SPPL2CQ8IUH8 684 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 KLHDC8AQ8IYD2 350 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 GHDCQ8N2G8 530 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 SNX31Q8N9S9 440 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 SMIM10Q96HG1 83 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 PDLIM2Q96JY6 352 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 CPNE1Q99829 537 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 NPLQ9BXD5 320 aaPredicted RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 PITHD1Q9GZP4 211 aaPredicted RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 REXO4Q9GZR2 422 aaKnown RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 DPH5Q9H2P9 285 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 SAYSD1Q9NPB0 183 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 CHST11Q9NPF2 352 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 NECTIN3Q9NQS3 549 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 PRTFDC1Q9NRG1 225 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 PNO1Q9NRX1 252 aaKnown RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 DNAJC11Q9NVH1 559 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 TINAGQ9UJW2 476 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 MRPS33Q9Y291 106 aaKnown RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 KLF13Q9Y2Y9 288 aaPredicted RBP9.17□□□□□ -0.94
VRK3-216ENST00000599342 CNTRLQ7Z7A1 2325 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 SCN2AQ99250 2005 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 DOPEY1Q5JWR5 2465 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 POLEQ07864 2286 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 ZGRF1Q86YA3 2104 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 LRIT2A6NDA9 550 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 SYNDIG1LA6NDD5 238 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 FAM187AA6NFU0 413 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 EIF3HO15372 352 aaKnown RBP eCLIP9.16□□□□□ -0.94
VRK3-216ENST00000599342 PHGDHO43175 533 aaKnown RBP9.16□□□□□ -0.94
VRK3-216ENST00000599342 ASNA1O43681 348 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 NME2P1O60361 137 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 CLEC3AO75596 197 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 PIAS1O75925 651 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 CCDC166P0CW27 439 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 NME2P22392 152 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 TNFRSF8P28908 595 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 SSTR1P30872 391 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 HNRNPH1P31943 449 aaKnown RBP9.16□□□□□ -0.94
VRK3-216ENST00000599342 GP5P40197 560 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 HSPA7P48741 367 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 HLCSP50747 726 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 SMSP52788 366 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 PLA2G16P53816 162 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 HSD17B7P56937 341 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 RAB38P57729 211 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 ATP6V0D1P61421 351 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 MRPS25P82663 173 aaKnown RBP9.16□□□□□ -0.94
VRK3-216ENST00000599342 TERF2Q15554 542 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 PDK4Q16654 411 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 PAGE2BQ5JRK9 111 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 ZNF468Q5VIY5 522 aaPredicted RBP9.16□□□□□ -0.94
VRK3-216ENST00000599342 SULT1C3Q6IMI6 304 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 XKRXQ6PP77 449 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 CTAGE3PQ8IX95 158 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 SRRM1Q8IYB3 904 aaKnown RBP9.16□□□□□ -0.94
VRK3-216ENST00000599342 EID3Q8N140 333 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 SPATA6LQ8N4H0 392 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 TMEM156Q8N614 296 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 FAM47BQ8NA70 645 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 NFAM1Q8NET5 270 aaPredicted RBP9.16□□□□□ -0.94
VRK3-216ENST00000599342 B3GNT7Q8NFL0 401 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 OR2L5Q8NG80 312 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 EXT2Q93063 718 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 MS4A6EQ96DS6 147 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 VMP1Q96GC9 406 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 SERINC2Q96SA4 455 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 RBBP8Q99708 897 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 CCDC77Q9BR77 488 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 TMEM79Q9BSE2 394 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 MCMBPQ9BTE3 642 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 AICDAQ9GZX7 198 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 EHD1Q9H4M9 534 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 NT5DC2Q9H857 520 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 CAB39LQ9H9S4 337 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms