RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ARFIP1P53367 373 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 MTTPP55157 894 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 CDH13P55290 713 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 SOX8P57073 446 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 OLR1P78380 273 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 CLCQ05315 142 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 DDX39BQ13838 428 aaKnown RBP14.18□□□□□ -0.14
UPF1-202ENST00000594243 ZRSR2Q15696 482 aaKnown RBP14.18□□□□□ -0.14
UPF1-202ENST00000594243 GGTA1PQ4G0N0 100 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 C10orf62Q5T681 223 aaPredicted RBP14.18□□□□□ -0.14
UPF1-202ENST00000594243 DEPDC1Q5TB30 811 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 KHDRBS2Q5VWX1 349 aaKnown RBP14.18□□□□□ -0.14
UPF1-202ENST00000594243 TTC19Q6DKK2 380 aaPredicted RBP14.18□□□□□ -0.14
UPF1-202ENST00000594243 FAAH2Q6GMR7 532 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 TMEM205Q6UW68 189 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 NDUFAF7Q7L592 441 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 TRABD2AQ86V40 505 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 C4orf33Q8N1A6 199 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 CCDC63Q8NA47 563 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 PLPP5Q8NEB5 264 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 OR4F6Q8NGB9 312 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 RDH11Q8TC12 318 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 NSUN5Q96P11 429 aaKnown RBP14.18□□□□□ -0.14
UPF1-202ENST00000594243 CDK15Q96Q40 435 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 SEMA4CQ9C0C4 833 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 VN1R1Q9GZP7 353 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 IQCGQ9H095 443 aaKnown RBP14.18□□□□□ -0.14
UPF1-202ENST00000594243 PRDM7Q9NQW5 492 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 MID2Q9UJV3 735 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 FBXL4Q9UKA2 621 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 EMCNQ9ULC0 261 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 STK38LQ9Y2H1 464 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 PCDHGB7Q9Y5F8 929 aa14.18□□□□□ -0.14
UPF1-202ENST00000594243 MGAQ8IWI9 3026 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 GCN1Q92616 2671 aaKnown RBP14.17□□□□□ -0.14
UPF1-202ENST00000594243 LOC102723996A0A087X1L8 192 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 NSG1A0A0A6YYJ2 146 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 A0A0G2JN53 185 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 A0A1W2PQ72 361 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 A6NL46 340 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 C4orf51C9J302 202 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 G3V2L1 256 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 FOXE1O00358 373 aaPredicted RBP14.17□□□□□ -0.14
UPF1-202ENST00000594243 PLIN3O60664 434 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 DNAJB6O75190 326 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 CEACAM4O75871 244 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 MLYCDO95822 493 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 HPP00738 406 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 PROCP04070 461 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 ICAM2P13598 275 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 TSFMP43897 325 aaKnown RBP14.17□□□□□ -0.14
UPF1-202ENST00000594243 RCN2Q14257 317 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 AP5B1Q2VPB7 878 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 LACTB2Q53H82 288 aaPredicted RBP14.17□□□□□ -0.14
UPF1-202ENST00000594243 UNC50Q53HI1 259 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 ZYG11AQ6WRX3 759 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 RPS27LQ71UM5 84 aaKnown RBP14.17□□□□□ -0.14
UPF1-202ENST00000594243 CROCCP2Q86T23 111 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 CA13Q8N1Q1 262 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 GALNT16Q8N428 558 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 FDCSPQ8NFU4 85 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 MYRIPQ8NFW9 859 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 WDR20Q8TBZ3 569 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 ADAMTS18Q8TE60 1221 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 TRPC4APQ8TEL6 797 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 RGMAQ96B86 450 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 C8orf44Q96CB5 159 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 L3HYPDHQ96EM0 354 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 QRFPRQ96P65 431 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 TMEM237Q96Q45 408 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 SMC6Q96SB8 1091 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 MTERF1Q99551 399 aaKnown RBP14.17□□□□□ -0.14
UPF1-202ENST00000594243 OR51B5Q9H339 312 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 MLXIPLQ9NP71 852 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 DMRT3Q9NQL9 472 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 MKS1Q9NXB0 559 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 GPR83Q9NYM4 423 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 CFAP46Q8IYW2 2715 aa14.17□□□□□ -0.14
UPF1-202ENST00000594243 HELZ2Q9BYK8 2649 aaKnown RBP14.16□□□□□ -0.14
UPF1-202ENST00000594243 IGHV1-45A0A0A0MS14 117 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 MAGEB17A8MXT2 336 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 B4GALT2O60909 372 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 CDC123O75794 336 aaPredicted RBP14.16□□□□□ -0.14
UPF1-202ENST00000594243 PRB1P04280 392 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 CPA3P15088 417 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 RAP1GDS1P52306 607 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 RPS13P62277 151 aaKnown RBP14.16□□□□□ -0.14
UPF1-202ENST00000594243 C19orf57Q0VDD7 668 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 IFT88Q13099 833 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 TRAF3Q13114 568 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 CUL3Q13618 768 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 RUNX2Q13950 521 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 NSDHLQ15738 373 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 KRT71Q3SY84 523 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 IRAK1BP1Q5VVH5 260 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 FRG2Q64ET8 278 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 OR4C11Q6IEV9 310 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 SRRM1Q8IYB3 904 aaKnown RBP14.16□□□□□ -0.14
UPF1-202ENST00000594243 BANPQ8N9N5 519 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 MTFMTQ96DP5 389 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms