RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 FCHO1O14526 889 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 CHST10O43529 356 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 PRMT3O60678 531 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 B3GALT4O96024 378 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 ZNF888P0CJ79 500 aaPredicted RBP13.8□□□□□ -0.2
PNKP-202ENST00000593706 CAPN3P20807 821 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 PTGER1P34995 402 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 TLE4Q04727 773 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 PPP1R3AQ16821 1122 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 FAM45BPQ6NSW5 357 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 ZDHHC24Q6UX98 284 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 MEX3BQ6ZN04 569 aaKnown RBP13.8□□□□□ -0.2
PNKP-202ENST00000593706 MAATS1Q7Z4T9 603 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 DOLPP1Q86YN1 238 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 ZBED8Q8IZ13 594 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 AFAP1L2Q8N4X5 818 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 GPATCH11Q8N954 259 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 FAM45AQ8TCE6 357 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 C14orf79Q96F83 325 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 PDLIM5Q96HC4 596 aaKnown RBP13.8□□□□□ -0.2
PNKP-202ENST00000593706 PHACTR1Q9C0D0 580 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 DPH5Q9H2P9 285 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 ZFATQ9P243 1243 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 KLF13Q9Y2Y9 288 aaPredicted RBP13.8□□□□□ -0.2
PNKP-202ENST00000593706 VWA7Q9Y334 891 aa13.8□□□□□ -0.2
PNKP-202ENST00000593706 CDK2AP1O14519 115 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 EIF3HO15372 352 aaKnown RBP eCLIP13.79□□□□□ -0.2
PNKP-202ENST00000593706 CDC40O60508 579 aaKnown RBP eCLIP13.79□□□□□ -0.2
PNKP-202ENST00000593706 WISP3O95389 354 aaPredicted RBP13.79□□□□□ -0.2
PNKP-202ENST00000593706 TPOP07202 933 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 NPPBP16860 134 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 ZNF37AP17032 561 aaPredicted RBP13.79□□□□□ -0.2
PNKP-202ENST00000593706 MAOAP21397 527 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 MEOX1P50221 254 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 KRTAP10-9P60411 292 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 IL2P60568 153 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 PDAP1Q13442 181 aaKnown RBP13.79□□□□□ -0.2
PNKP-202ENST00000593706 TRADDQ15628 312 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 RNFT1Q5M7Z0 435 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 SBSNQ6UWP8 590 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 QSOX2Q6ZRP7 698 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 CD163Q86VB7 1156 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 POGLUT1Q8NBL1 392 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 ARMC2Q8NEN0 867 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 ABHD11Q8NFV4 315 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 DMRTA2Q96SC8 542 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 SPOCK3Q9BQ16 436 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 TRIM54Q9BYV2 358 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 DEFB126Q9BYW3 111 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 RHBGQ9H310 441 aa13.79□□□□□ -0.2
PNKP-202ENST00000593706 TCRBV9S1A1TA0A576 114 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 URADA6NGE7 173 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 CXorf49A8MYA2 514 aaPredicted RBP13.78□□□□□ -0.2
PNKP-202ENST00000593706 PIAS1O75925 651 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 RNH1P13489 461 aaKnown RBP13.78□□□□□ -0.2
PNKP-202ENST00000593706 PTGS2P35354 604 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 RFC3P40938 356 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 HNF4AP41235 474 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 HLCSP50747 726 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 AP1S2P56377 157 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 MLF1P58340 268 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 GPX6P59796 221 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 RAB8AP61006 207 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 CALCOCO2Q13137 446 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 CSHL1Q14406 222 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 CATSPEREQ5SY80 951 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 CYS1Q717R9 158 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 STRA8Q7Z7C7 330 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 CYP4Z2PQ8N1L4 340 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 NT5CQ8TCD5 201 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 SLC5A11Q8WWX8 675 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 TSNARE1Q96NA8 513 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 SARGQ9BW04 601 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 RHOJQ9H4E5 214 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 MCCC2Q9HCC0 563 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 PRDM9Q9NQV7 894 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 ZFP69BQ9UJL9 534 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 ASB1Q9Y576 335 aa13.78□□□□□ -0.2
PNKP-202ENST00000593706 TRBV11-1A0A0K0K1C0 115 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 FAM95CA0A1B0GW59 222 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 TCRBV16S1A1N1A0A5B0 115 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 FAM159BA6NKW6 160 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 A8MUA0 341 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 KLRC4-KLRK1H3BQV0 150 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 ADAM10O14672 748 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 DNAJB6O75190 326 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 GUCA1CO95843 209 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 FREM3P0C091 2139 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 SSTR1P30872 391 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 TRHRP34981 398 aaPredicted RBP13.77□□□□□ -0.21
PNKP-202ENST00000593706 AHRP35869 848 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 TAS2R39P59534 338 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 BTG2P78543 158 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 AKAP6Q13023 2319 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 ZNF460Q14592 562 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 FGD2Q7Z6J4 655 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 TMPRSS11BQ86T26 416 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 ZNF227Q86WZ6 799 aa13.77□□□□□ -0.21
PNKP-202ENST00000593706 CHERPQ8IWX8 916 aaKnown RBP13.77□□□□□ -0.21
PNKP-202ENST00000593706 TMEM156Q8N614 296 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms