RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CDCP1Q9H5V8 836 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 NECTIN3Q9NQS3 549 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 KLHL1Q9NR64 748 aa19.19■□□□□ 0.66
SHMT1-209ENST00000582653 SUCOQ9UBS9 1254 aaKnown RBP19.19■□□□□ 0.66
SHMT1-209ENST00000582653 KLF2Q9Y5W3 355 aaPredicted RBP19.19■□□□□ 0.66
SHMT1-209ENST00000582653 PRSS44E7EML9 344 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 PRAMEF4O60810 478 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 RNH1P13489 461 aaKnown RBP19.18■□□□□ 0.66
SHMT1-209ENST00000582653 STMN1P16949 149 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 EEF1DP29692 281 aaKnown RBP19.18■□□□□ 0.66
SHMT1-209ENST00000582653 HNRNPH1P31943 449 aaKnown RBP19.18■□□□□ 0.66
SHMT1-209ENST00000582653 GP5P40197 560 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 HSPA7P48741 367 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 TAS2R50P59544 299 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 RUNX2Q13950 521 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 PRAMEF9Q5VWM5 478 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 QSOX2Q6ZRP7 698 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 CYS1Q717R9 158 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 CCDC25Q86WR0 208 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 RPS19BP1Q86WX3 136 aaKnown RBP19.18■□□□□ 0.66
SHMT1-209ENST00000582653 HORMAD2Q8N7B1 307 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 THAP3Q8WTV1 239 aaPredicted RBP19.18■□□□□ 0.66
SHMT1-209ENST00000582653 ITLN2Q8WWU7 325 aaPredicted RBP19.18■□□□□ 0.66
SHMT1-209ENST00000582653 CCDC120Q96HB5 630 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 WWOXQ9NZC7 414 aa19.18■□□□□ 0.66
SHMT1-209ENST00000582653 UTP11Q9Y3A2 253 aaKnown RBP19.18■□□□□ 0.66
SHMT1-209ENST00000582653 ASPDHA6ND91 283 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 LRIT2A6NDA9 550 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 GABRR3A8MPY1 467 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 PSMD12O00232 456 aaPredicted RBP19.17■□□□□ 0.66
SHMT1-209ENST00000582653 MLYCDO95822 493 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 GGT5P36269 586 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 KCNC1P48547 511 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 ETF1P62495 437 aaKnown RBP19.17■□□□□ 0.66
SHMT1-209ENST00000582653 ILF2Q12905 390 aaKnown RBP19.17■□□□□ 0.66
SHMT1-209ENST00000582653 KBTBD12Q3ZCT8 623 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 ADNP2Q6IQ32 1131 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 SLC25A25Q6KCM7 469 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 ZDHHC24Q6UX98 284 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 MRGPRGQ86SM5 289 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 PPM1NQ8N819 430 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 TMEM178AQ8NBL3 297 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 FBXO25Q8TCJ0 367 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 RUBCNLQ9H714 662 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 PRDM9Q9NQV7 894 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 DNAJC11Q9NVH1 559 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 CD274Q9NZQ7 290 aa19.17■□□□□ 0.66
SHMT1-209ENST00000582653 IGKV3D-11A0A0A0MRZ8 115 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 TCRBV16S1A1N1A0A5B0 115 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ARHGAP10A1A4S6 786 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ERI3O43414 337 aaKnown RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 SLC19A2O60779 497 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 NEURL1O76050 574 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 TBX6O95947 436 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 SP1P08047 785 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 MAGEA4P43358 317 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 RAB10P61026 200 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ATP6V0D1P61421 351 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 STXBP1P61764 594 aaKnown RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 OC90Q02509 493 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ZKSCAN8Q15776 578 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ZNF468Q5VIY5 522 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 VN1R5Q7Z5H4 357 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 KRT78Q8N1N4 520 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ZNF808Q8N4W9 903 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 SNX31Q8N9S9 440 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 EXT2Q93063 718 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 GAL3ST3Q96A11 431 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 MS4A6EQ96DS6 147 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 FAR2Q96K12 515 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 UBXN10Q96LJ8 280 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 GPR137Q96N19 417 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 CAPS2Q9BXY5 557 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 GPRC5BQ9NZH0 403 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 LRFN1Q9P244 771 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ZNF490Q9ULM2 529 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-209ENST00000582653 ZNF835Q9Y2P0 537 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 MYO7BQ6PIF6 2116 aa19.16■□□□□ 0.66
SHMT1-209ENST00000582653 CLGNO14967 610 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 STK16O75716 305 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 GSTA2P09210 222 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 SPRP35270 261 aaPredicted RBP19.15■□□□□ 0.66
SHMT1-209ENST00000582653 PLA2G16P53816 162 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 CASP6P55212 293 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 ALDH6A1Q02252 535 aaKnown RBP19.15■□□□□ 0.66
SHMT1-209ENST00000582653 DOC2AQ14183 400 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 GRTP1Q5TC63 336 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 SULT1C3Q6IMI6 304 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 RPTNQ6XPR3 784 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 CMC1Q7Z7K0 106 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 TCAIMQ8N3R3 496 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 NFAM1Q8NET5 270 aaPredicted RBP19.15■□□□□ 0.66
SHMT1-209ENST00000582653 TTLQ8NG68 377 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 FBF1Q8TES7 1133 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 NT5DC2Q9H857 520 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 TRIM45Q9H8W5 580 aaPredicted RBP19.15■□□□□ 0.66
SHMT1-209ENST00000582653 CNOT10Q9H9A5 744 aaKnown RBP19.15■□□□□ 0.66
SHMT1-209ENST00000582653 PTBP2Q9UKA9 531 aaKnown RBP19.15■□□□□ 0.66
SHMT1-209ENST00000582653 RNF112Q9ULX5 631 aa19.15■□□□□ 0.66
SHMT1-209ENST00000582653 ASB1Q9Y576 335 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms