RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SPATA4Q8NEY3 305 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 OR2L5Q8NG80 312 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 TSLPQ969D9 159 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 KIAA1191Q96A73 305 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 MS4A6EQ96DS6 147 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 GPR137Q96N19 417 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 TSNARE1Q96NA8 513 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 FRMD6Q96NE9 622 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 KRT12Q99456 494 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 RBBP8Q99708 897 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 EGFL8Q99944 293 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 EFCAB11Q9BUY7 163 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 ROGDIQ9GZN7 287 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 MRPS33Q9Y291 106 aaKnown RBP13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 DCHS2Q6V1P9 2916 aa13.58□□□□□ -0.24
SMARCE1-216ENST00000580419 TCRBV9S1A1TA0A576 114 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 NPEPPSL1A6NEC2 478 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 OR2W5A6NFC9 320 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF860A6NHJ4 632 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 CLDN4O14493 209 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 FCHO1O14526 889 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 NME2P1O60361 137 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 ZG16O60844 167 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 WDR47O94967 919 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 NME2P22392 152 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 CYB561P49447 251 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 TGM3Q08188 693 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 BIKQ13323 160 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 EFTUD2Q15029 972 aaKnown RBP eCLIP13.57□□□□□ -0.241e-6■■■■□ 25.2
SMARCE1-216ENST00000580419 PAGE2BQ5JRK9 111 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 GRTP1Q5TC63 336 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 SLC25A25Q6KCM7 469 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF572Q7Z3I7 529 aaPredicted RBP13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 GPSM1Q86YR5 675 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 SIAH3Q8IW03 269 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 GPALPP1Q8IXQ4 340 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 CA13Q8N1Q1 262 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 APCDD1LQ8NCL9 501 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 B3GNT7Q8NFL0 401 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 UBE2E3Q969T4 207 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 PTCD3Q96EY7 689 aaKnown RBP13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 FAR2Q96K12 515 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 SIGLEC12Q96PQ1 595 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 SERINC2Q96SA4 455 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 CHST11Q9NPF2 352 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 SMYD2Q9NRG4 433 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 DNAJC11Q9NVH1 559 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 LRFN1Q9P244 771 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 PTBP2Q9UKA9 531 aaKnown RBP13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 SNX24Q9Y343 169 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 TSC22D4Q9Y3Q8 395 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 TACC2O95359 2948 aa13.57□□□□□ -0.24
SMARCE1-216ENST00000580419 ANKDD1BA6NHY2 528 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 CLGNO14967 610 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 FANCGO15287 622 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 B3GALT2O43825 422 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 SLC19A2O60779 497 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 STK16O75716 305 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 CDC123O75794 336 aaPredicted RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 SCELO95171 688 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 SERPIND1P05546 499 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 CD1DP15813 335 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 SPRP35270 261 aaPredicted RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 CLCN2P51788 898 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 GPR143P51810 404 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 PGGT1BP53609 377 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 RAB38P57729 211 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 KCNK10P57789 538 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 RAB8AP61006 207 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 RAB10P61026 200 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 RBBP5Q15291 538 aaKnown RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 HIST2H2BCQ6DN03 193 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 METTL2BQ6P1Q9 378 aaKnown RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 C3orf62Q6ZUJ4 267 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 LRRC70Q7Z2Q7 622 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 FJX1Q86VR8 437 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 LURAP1LQ8IV03 231 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 SHISA5Q8N114 240 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 EID3Q8N140 333 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 STAG3L4Q8TBR4 150 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 PHF10Q8WUB8 498 aaKnown RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 ITLN2Q8WWU7 325 aaPredicted RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 QRFPRQ96P65 431 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 TRIM31Q9BZY9 425 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 AICDAQ9GZX7 198 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 RAB17Q9H0T7 212 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 KLHL31Q9H511 634 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 LYRM4Q9HD34 91 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 ADAP2Q9NPF8 381 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 GRHL1Q9NZI5 618 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 ADGRE2Q9UHX3 823 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 MTO1Q9Y2Z2 717 aaKnown RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 UTP11Q9Y3A2 253 aaKnown RBP13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 CLDN16Q9Y5I7 305 aa13.56□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF407Q9C0G0 2248 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 CTAGE15A4D2H0 777 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 TAPBPO15533 448 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 B4GALT2O60909 372 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 DNAJB6O75190 326 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms