RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 C2P06681 752 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 FHP07954 510 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CNTFP26441 200 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 GLRBP48167 497 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 OLR1P78380 273 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 ARG2P78540 354 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 IRF8Q02556 426 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 ACTN3Q08043 901 aaPredicted RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 MFAP5Q13361 173 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 RCN2Q14257 317 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 ACAP2Q15057 778 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 IGFBP7Q16270 282 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 C18orf21Q32NC0 220 aaPredicted RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 HIST2H2BCQ6DN03 193 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 TRIM40Q6P9F5 258 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 TMEM205Q6UW68 189 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 SLCO4C1Q6ZQN7 724 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 LINC00696Q6ZRV3 163 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CPEB2Q7Z5Q1 589 aaKnown RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 ISCA2Q86U28 154 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 PDSS2Q86YH6 399 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS53-214ENST00000572607 AFAP1L2Q8N4X5 818 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 RBMXL3Q8N7X1 1067 aaKnown RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 OR5T3Q8NGG3 340 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 RHEBL1Q8TAI7 183 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 DNAJB14Q8TBM8 379 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 BRIX1Q8TDN6 353 aaKnown RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 ADAMTS18Q8TE60 1221 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 UTP15Q8TED0 518 aaKnown RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 PPP4R1Q8TF05 950 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 KCTD4Q8WVF5 259 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 GTPBP3Q969Y2 492 aaKnown RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 GAL3ST3Q96A11 431 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 MIB2Q96AX9 1013 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 TBC1D20Q96BZ9 403 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 NXNL1Q96CM4 212 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 MOCOSQ96EN8 888 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CNDP1Q96KN2 507 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 LMF1Q96S06 567 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 PAFAH2Q99487 392 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 FUT8Q9BYC5 575 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CD244Q9BZW8 370 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 VN1R1Q9GZP7 353 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 ZNF700Q9H0M5 742 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 SPNS1Q9H2V7 528 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 COPS7BQ9H9Q2 264 aaPredicted RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 IGSF5Q9NSI5 407 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 ABI3Q9P2A4 366 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 PTGFRNQ9P2B2 879 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 PTBP2Q9UKA9 531 aaKnown RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 PLAAQ9Y263 795 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CACNA1DQ01668 2161 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 SNRNP200O75643 2136 aaKnown RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 CRYBG3Q68DQ2 2970 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CELSR2Q9HCU4 2923 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 EXOC1LA0A1B0GW35 172 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 MAGEB17A8MXT2 336 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 UBXN8O00124 270 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 ERI3O43414 337 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 B3GALT2O43825 422 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 B4GALT2O60909 372 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 KLHL2O95198 593 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 RBP1P09455 135 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 FBXO45P0C2W1 286 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 RHOXF2BP0C7M4 288 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 PRR35P0CG20 571 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 MYBL2P10244 700 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 PCNAP12004 261 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 RNH1P13489 461 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 EPB42P16452 691 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 SERPINB1P30740 379 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 ARL1P40616 181 aaPredicted RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 PIK3CGP48736 1102 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 BTN3A2P78410 334 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 PHEXP78562 749 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 IRF9Q00978 393 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 DLG1Q12959 904 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 CHIT1Q13231 466 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 DOC2AQ14183 400 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 ELOAQ14241 798 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 ABRAXAS2Q15018 415 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 PCOLCEQ15113 449 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 TLR1Q15399 786 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 INPP5JQ15735 1006 aaPredicted RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 NSDHLQ15738 373 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 TBCCQ15814 346 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 EXT1Q16394 746 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 TSNAXIP1Q2TAA8 658 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 BTBD16Q32M84 506 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 FBXO48Q5FWF7 155 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 ABHD17BQ5VST6 288 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 Q6ZS92 163 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 TRMT10CQ7L0Y3 403 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 ANKRD37Q7Z713 158 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 MYLK4Q86YV6 388 aaPredicted RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 CNPY4Q8N129 248 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 ANKRD53Q8N9V6 530 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 GALNT11Q8NCW6 608 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 SRFBP1Q8NEF9 429 aaKnown RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms