RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CCDC124Q96CT7 223 aaKnown RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 CLPTM1LQ96KA5 538 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 CCDC115Q96NT0 180 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PANX1Q96RD7 426 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 DUSP23Q9BVJ7 150 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 MIR1-1HGQ9H1L0 117 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 VCXQ9H320 206 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 OR51B5Q9H339 312 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 XKR8Q9H6D3 395 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 GORASP2Q9H8Y8 452 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 NEUROD4Q9HD90 331 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 CD93Q9NPY3 652 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PRMT8Q9NR22 394 aaPredicted RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 HRASLS2Q9NWW9 162 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 LYARQ9NX58 379 aaKnown RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 INVSQ9Y283 1065 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 CA5BQ9Y2D0 317 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 SNX13Q9Y5W8 968 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PKD1L2Q7Z442 2459 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 TRPM6Q9BX84 2022 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 BAHCC1Q9P281 2608 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 C1orf226A1L170 272 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 GSAPA4D1B5 854 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 BLACEA4D250 179 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 KRT87PA6NCN2 255 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 OR6C74A6NCV1 312 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 OR5K3A6NET4 321 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 PRORSD1PA6NEY8 169 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 GABRR3A8MPY1 467 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 FXYD1O00168 92 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 MEN1O00255 615 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 GSTA4O15217 222 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 PEX1O43933 1283 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 GPR37L1O60883 481 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SOX30O94993 753 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 EPN2O95208 641 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 C8BP07358 591 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 DCNP07585 359 aaKnown RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 FURINP09958 794 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 ANPEPP15144 967 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 IL1RNP18510 177 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SLC7A1P30825 629 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 TLX1P31314 330 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 GRIA3P42263 894 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 DGKQP52824 942 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 RAE1P78406 368 aaKnown RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 KLC1Q07866 573 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 VAC14Q08AM6 782 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 VEZF1Q14119 521 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 RCN1Q15293 331 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 TMEM31Q5JXX7 168 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 TPRG1LQ5T0D9 272 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 LYSMD4Q5XG99 296 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 FIGLAQ6QHK4 219 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SPESP1Q6UW49 350 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SPATA24Q86W54 205 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 PAQR7Q86WK9 346 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 C17orf82Q86X59 251 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 EID3Q8N140 333 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 NAGSQ8N159 534 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 C2orf73Q8N5S3 287 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 ANKRD53Q8N9V6 530 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 BHLHE22Q8NFJ8 381 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 GPR156Q8NFN8 814 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 OR2T12Q8NG77 320 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 GOT1L1Q8NHS2 421 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 CCL4L1Q8NHW4 92 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 C1orf216Q8TAB5 229 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 BAHD1Q8TBE0 780 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 LMX1AQ8TE12 382 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SLC37A2Q8TED4 501 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 CREB3L4Q8TEY5 395 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 GAB3Q8WWW8 586 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 OR5P2Q8WZ92 322 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 NCLNQ969V3 563 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 MOAP1Q96BY2 351 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 ZBED6CLQ96FA7 236 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 ZDHHC12Q96GR4 267 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 TCTN2Q96GX1 697 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 OR2A14Q96R47 310 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SLC38A3Q99624 504 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 ZFYVE21Q9BQ24 234 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 LRRC61Q9BV99 259 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 NPLQ9BXD5 320 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 UGT2B28Q9BY64 529 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SEMA6CQ9H3T2 930 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 COPS7BQ9H9Q2 264 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 IL1RL2Q9HB29 575 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 C1GALT1Q9NS00 363 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 ACSS1Q9NUB1 689 aaPredicted RBP7.6□□□□□ -1.19
VPS39-213ENST00000570062 GIMAP4Q9NUV9 329 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 ARMC1Q9NVT9 282 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 SH3BP4Q9P0V3 963 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 DLGAP2Q9P1A6 1054 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 CIDEBQ9UHD4 219 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 MUTYHQ9UIF7 546 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 PHF11Q9UIL8 331 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 ZNF451Q9Y4E5 1061 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms