RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KLHDC8AQ8IYD2 350 aa15.04■□□□□ -0
CLN3-229ENST00000567963 ZBED8Q8IZ13 594 aa15.04■□□□□ -0
CLN3-229ENST00000567963 ARMC10Q8N2F6 343 aa15.04■□□□□ -0
CLN3-229ENST00000567963 ARMC2Q8NEN0 867 aa15.04■□□□□ -0
CLN3-229ENST00000567963 TTLQ8NG68 377 aa15.04■□□□□ -0
CLN3-229ENST00000567963 ADAMTS18Q8TE60 1221 aa15.04■□□□□ -0
CLN3-229ENST00000567963 MAGED4Q96JG8 741 aa15.04■□□□□ -0
CLN3-229ENST00000567963 RUBCNLQ9H714 662 aa15.04■□□□□ -0
CLN3-229ENST00000567963 CHST11Q9NPF2 352 aa15.04■□□□□ -0
CLN3-229ENST00000567963 CSMD2Q7Z408 3487 aa15.04■□□□□ -0
CLN3-229ENST00000567963 LRIT2A6NDA9 550 aa15.03■□□□□ -0
CLN3-229ENST00000567963 NME2P1O60361 137 aa15.03■□□□□ -0
CLN3-229ENST00000567963 PIAS1O75925 651 aa15.03■□□□□ -0
CLN3-229ENST00000567963 ESRRAP11474 423 aaPredicted RBP15.03■□□□□ -0
CLN3-229ENST00000567963 NME2P22392 152 aa15.03■□□□□ -0
CLN3-229ENST00000567963 HTR1EP28566 365 aa15.03■□□□□ -0
CLN3-229ENST00000567963 TRHRP34981 398 aaPredicted RBP15.03■□□□□ -0
CLN3-229ENST00000567963 PAFAH1B1P43034 410 aa15.03■□□□□ -0
CLN3-229ENST00000567963 ADORA2A-AS1P86434 159 aa15.03■□□□□ -0
CLN3-229ENST00000567963 RUNX2Q13950 521 aa15.03■□□□□ -0
CLN3-229ENST00000567963 NAA30Q147X3 362 aaPredicted RBP15.03■□□□□ -0
CLN3-229ENST00000567963 TGFBIQ15582 683 aa15.03■□□□□ -0
CLN3-229ENST00000567963 ZNF630Q2M218 657 aaPredicted RBP15.03■□□□□ -0
CLN3-229ENST00000567963 APCDD1LQ8NCL9 501 aa15.03■□□□□ -0
CLN3-229ENST00000567963 GAL3ST3Q96A11 431 aa15.03■□□□□ -0
CLN3-229ENST00000567963 MS4A6EQ96DS6 147 aa15.03■□□□□ -0
CLN3-229ENST00000567963 FAR2Q96K12 515 aa15.03■□□□□ -0
CLN3-229ENST00000567963 NAPGQ99747 312 aaPredicted RBP15.03■□□□□ -0
CLN3-229ENST00000567963 DEFB126Q9BYW3 111 aa15.03■□□□□ -0
CLN3-229ENST00000567963 DERL2Q9GZP9 239 aa15.03■□□□□ -0
CLN3-229ENST00000567963 SMYD2Q9NRG4 433 aa15.03■□□□□ -0
CLN3-229ENST00000567963 SNX24Q9Y343 169 aa15.03■□□□□ -0
CLN3-229ENST00000567963 MMACHCQ9Y4U1 282 aa15.03■□□□□ -0
CLN3-229ENST00000567963 GTF3C1Q12789 2109 aa15.03■□□□□ -0
CLN3-229ENST00000567963 PCNX1Q96RV3 2341 aa15.03■□□□□ -0
CLN3-229ENST00000567963 NCOA6Q14686 2063 aaPredicted RBP15.03■□□□□ -0
CLN3-229ENST00000567963 NCF1BA6NI72 391 aaPredicted RBP15.02■□□□□ -0
CLN3-229ENST00000567963 NCF1CA8MVU1 366 aaPredicted RBP15.02■□□□□ -0
CLN3-229ENST00000567963 FCHO1O14526 889 aa15.02■□□□□ -0
CLN3-229ENST00000567963 WISP3O95389 354 aaPredicted RBP15.02■□□□□ -0
CLN3-229ENST00000567963 NCF1P14598 390 aaPredicted RBP15.02■□□□□ -0
CLN3-229ENST00000567963 AGAP20933 346 aa15.02■□□□□ -0
CLN3-229ENST00000567963 GSTM2P28161 218 aa15.02■□□□□ -0
CLN3-229ENST00000567963 HNRNPH1P31943 449 aaKnown RBP15.02■□□□□ -0
CLN3-229ENST00000567963 HLCSP50747 726 aa15.02■□□□□ -0
CLN3-229ENST00000567963 POU4F1Q01851 419 aa15.02■□□□□ -0
CLN3-229ENST00000567963 ILF2Q12905 390 aaKnown RBP15.02■□□□□ -0
CLN3-229ENST00000567963 SLBPQ14493 270 aaKnown RBP eCLIP15.02■□□□□ -0
CLN3-229ENST00000567963 RNFT1Q5M7Z0 435 aa15.02■□□□□ -0
CLN3-229ENST00000567963 KRT78Q8N1N4 520 aa15.02■□□□□ -0
CLN3-229ENST00000567963 CPSF7Q8N684 471 aaKnown RBP15.02■□□□□ -0
CLN3-229ENST00000567963 B3GNT7Q8NFL0 401 aa15.02■□□□□ -0
CLN3-229ENST00000567963 SEC16BQ96JE7 1060 aa15.02■□□□□ -0
CLN3-229ENST00000567963 KRT12Q99456 494 aa15.02■□□□□ -0
CLN3-229ENST00000567963 NPLQ9BXD5 320 aaPredicted RBP15.02■□□□□ -0
CLN3-229ENST00000567963 CAPS2Q9BXY5 557 aa15.02■□□□□ -0
CLN3-229ENST00000567963 NT5DC2Q9H857 520 aa15.02■□□□□ -0
CLN3-229ENST00000567963 MTO1Q9Y2Z2 717 aaKnown RBP15.02■□□□□ -0
CLN3-229ENST00000567963 FBN2P35556 2912 aa15.02□□□□□ -0.01
CLN3-229ENST00000567963 A0A0G2JN53 185 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 TAPBPO15533 448 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 ERI3O43414 337 aaKnown RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 MYO1DO94832 1006 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 TBX6O95947 436 aaPredicted RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 GGT5P36269 586 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CLCN2P51788 898 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 SLC12A2P55011 1212 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 TERF2Q15554 542 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CAPN12Q6ZSI9 719 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 SCUBE1Q8IWY4 988 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 GHDCQ8N2G8 530 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 SPATA6LQ8N4H0 392 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 BBOF1Q8ND07 529 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 PYROXD1Q8WU10 500 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CCT6BQ92526 530 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 TMEM125Q96AQ2 219 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 PDLIM2Q96JY6 352 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 PITHD1Q9GZP4 211 aaPredicted RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 CAB39LQ9H9S4 337 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 GPRC5BQ9NZH0 403 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 RNF14Q9UBS8 474 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 PPIEQ9UNP9 301 aaKnown RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 MEMO1Q9Y316 297 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CLDN16Q9Y5I7 305 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 ABCA12Q86UK0 2595 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 DCHS2Q6V1P9 2916 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 ANKDD1BA6NHY2 528 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CXorf49A8MYA2 514 aaPredicted RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 CLEC3AO75596 197 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CCDC166P0CW27 439 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 ZNF24P17028 368 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 SSTR1P30872 391 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 GPR143P51810 404 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 SMSP52788 366 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 HSD17B7P56937 341 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 RAB38P57729 211 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 ADPRMQ3LIE5 342 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CHERPQ8IWX8 916 aaKnown RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 TCAIMQ8N3R3 496 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 QRFPRQ96P65 431 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms