RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ANKRD17O75179 2603 aaKnown RBP16.34■□□□□ 0.21
CLN3-217ENST00000565354 A0A088AWK7 358 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 CDC14CA4D256 554 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 TTLL8A6PVC2 850 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 H0YIG0 161 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 SGK494L7N484 410 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 FOXS1O43638 330 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 KLHL18O94889 574 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 MLYCDO95822 493 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 CAPN1P07384 714 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 ITGAXP20702 1163 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 ZNF10P21506 573 aaPredicted RBP16.33■□□□□ 0.2
CLN3-217ENST00000565354 RAB8AP61006 207 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 NAA20P61599 178 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 IFT88Q13099 833 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 E2F2Q14209 437 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 LIPMQ5VYY2 423 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 TRIM40Q6P9F5 258 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 LAS2Q8IYD9 372 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 L3MBTL4Q8NA19 623 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 OR7G3Q8NG95 312 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 OR4F6Q8NGB9 312 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 CPT1CQ8TCG5 803 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 GAL3ST3Q96A11 431 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 MIEF2Q96C03 454 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 CENPKQ9BS16 269 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 REXO4Q9GZR2 422 aaKnown RBP16.33■□□□□ 0.2
CLN3-217ENST00000565354 COPS7BQ9H9Q2 264 aaPredicted RBP16.33■□□□□ 0.2
CLN3-217ENST00000565354 ZBTB26Q9HCK0 441 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 KCNK9Q9NPC2 374 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 SLC17A7Q9P2U7 560 aa16.33■□□□□ 0.2
CLN3-217ENST00000565354 NXT1Q9UKK6 140 aaKnown RBP16.33■□□□□ 0.2
CLN3-217ENST00000565354 FFAR3O14843 346 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 GPR42O15529 346 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 ERI3O43414 337 aaKnown RBP16.32■□□□□ 0.2
CLN3-217ENST00000565354 SEMA7AO75326 666 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 CREB1P16220 341 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 NAGLUP54802 743 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 TRAF3Q13114 568 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 ZRSR2Q15696 482 aaKnown RBP16.32■□□□□ 0.2
CLN3-217ENST00000565354 DEFB134Q4QY38 66 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 MFSD4BQ5TF39 518 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 ADNP2Q6IQ32 1131 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 MRPL14Q6P1L8 145 aaKnown RBP16.32■□□□□ 0.2
CLN3-217ENST00000565354 CHSY3Q70JA7 882 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 COX15Q7KZN9 410 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 PRSS41Q7RTY9 318 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 HDXQ7Z353 690 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 EXOC3L1Q86VI1 746 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 RAB43Q86YS6 212 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 C10orf107Q8IVU9 208 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 PRSS58Q8IYP2 241 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 ARHGEF39Q8N4T4 335 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 GOLGA6L1Q8N7Z2 621 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 UTP15Q8TED0 518 aaKnown RBP16.32■□□□□ 0.2
CLN3-217ENST00000565354 ZNF473Q8WTR7 871 aaKnown RBP16.32■□□□□ 0.2
CLN3-217ENST00000565354 CMTM7Q96FZ5 175 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 KLHL31Q9H511 634 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 ELOVL6Q9H5J4 265 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 SOX17Q9H6I2 414 aaPredicted RBP16.32■□□□□ 0.2
CLN3-217ENST00000565354 WDR54Q9H977 334 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 MKKSQ9NPJ1 570 aaPredicted RBP16.32■□□□□ 0.2
CLN3-217ENST00000565354 SLC22A11Q9NSA0 550 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 OXSMQ9NWU1 459 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 HCN3Q9P1Z3 774 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 CTSFQ9UBX1 484 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 MAP4K5Q9Y4K4 846 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 ACTL7BQ9Y614 415 aa16.32■□□□□ 0.2
CLN3-217ENST00000565354 LRIT2A6NDA9 550 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 ZNF860A6NHJ4 632 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 H0YIV9 168 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 TRIM13O60858 407 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 SH3BGRLO75368 114 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 RDH16O75452 317 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 CRCPO75575 148 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 OR4F21O95013 312 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 ONECUT2O95948 504 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 TGFB1P01137 390 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 PDGFAP04085 211 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 RNF224P0DH78 156 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 HMOX2P30519 316 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 OTX2P32243 289 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 RAP1GDS1P52306 607 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 PLA2G16P53816 162 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 DNAJB13P59910 316 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 BTN3A2P78410 334 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 MAT1AQ00266 395 aaKnown RBP16.31■□□□□ 0.2
CLN3-217ENST00000565354 LCP2Q13094 533 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 PCLAFQ15004 111 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 NKG7Q16617 165 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 SHISA6Q6ZSJ9 500 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 GPRIN3Q6ZVF9 776 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 VN1R5Q7Z5H4 357 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 SRFBP1Q8NEF9 429 aaKnown RBP16.31■□□□□ 0.2
CLN3-217ENST00000565354 OR2Y1Q8NGV0 311 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 HUS1BQ8NHY5 278 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 STT3BQ8TCJ2 826 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 MTFMTQ96DP5 389 aaKnown RBP16.31■□□□□ 0.2
CLN3-217ENST00000565354 ZNF382Q96SR6 550 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 MTERF1Q99551 399 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms