RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CD96P40200 585 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 HNRNPFP52597 415 aaKnown RBP13.94□□□□□ -0.18
CLN3-213ENST00000565047 STXBP1P61764 594 aaKnown RBP13.94□□□□□ -0.18
CLN3-213ENST00000565047 SKP1P63208 163 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 BTN3A2P78410 334 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 NAB1Q13506 487 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 TUBA3CQ13748 450 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 TBCCQ15814 346 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 ABHD17CQ6PCB6 329 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 TUBA3EQ6PEY2 450 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 UBE3DQ7Z6J8 389 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 CCDC25Q86WR0 208 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 NAV2Q8IVL1 2488 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 KIF2BQ8N4N8 673 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 TMEM52Q8NDY8 209 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 STAG3L4Q8TBR4 150 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 GAL3ST3Q96A11 431 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 ZNF354BQ96LW1 612 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 PTCHD1Q96NR3 888 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 GPR78Q96P69 363 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 SIGLEC12Q96PQ1 595 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 NPLQ9BXD5 320 aaPredicted RBP13.94□□□□□ -0.18
CLN3-213ENST00000565047 FUT8Q9BYC5 575 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 ALG9Q9H6U8 611 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 CNOT10Q9H9A5 744 aaKnown RBP13.94□□□□□ -0.18
CLN3-213ENST00000565047 KCNK13Q9HB14 408 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 PRDM9Q9NQV7 894 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 PRDM7Q9NQW5 492 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 OLAHQ9NV23 265 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 TEKT2Q9UIF3 430 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 PPIEQ9UNP9 301 aaKnown RBP13.94□□□□□ -0.18
CLN3-213ENST00000565047 SPTBN1Q01082 2364 aaKnown RBP13.93□□□□□ -0.18
CLN3-213ENST00000565047 CYR61O00622 381 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 NEURL1O76050 574 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 TFEBP19484 476 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 GPR143P51810 404 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 PDK4Q16654 411 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 MEP1AQ16819 746 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 ZNF468Q5VIY5 522 aaPredicted RBP13.93□□□□□ -0.18
CLN3-213ENST00000565047 FAM180AQ6UWF9 173 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 ZNF227Q86WZ6 799 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 LGI4Q8N135 537 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 KRT78Q8N1N4 520 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 MMGT1Q8N4V1 131 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 OR2L5Q8NG80 312 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 UBTD2Q8WUN7 234 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 NXNL1Q96CM4 212 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 PTCD3Q96EY7 689 aaKnown RBP13.93□□□□□ -0.18
CLN3-213ENST00000565047 SCMH1Q96GD3 660 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLN3-213ENST00000565047 TRIM45Q9H8W5 580 aaPredicted RBP13.93□□□□□ -0.18
CLN3-213ENST00000565047 WWOXQ9NZC7 414 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 ABI3Q9P2A4 366 aa13.93□□□□□ -0.18
CLN3-213ENST00000565047 DMGDHQ9UI17 866 aaKnown RBP13.93□□□□□ -0.18
CLN3-213ENST00000565047 A0A0G2JN53 185 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 SAGE2PA6NJ88 616 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 CDK2AP1O14519 115 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 CLGNO14967 610 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 ERI3O43414 337 aaKnown RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 KLK8O60259 260 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 KERAO60938 352 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 C2P06681 752 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 LTA4HP09960 611 aaKnown RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 ECHS1P30084 290 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 ST13P50502 369 aaKnown RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 IRF9Q00978 393 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 CKAP4Q07065 602 aaKnown RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 ACTN3Q08043 901 aaPredicted RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 C4orf17Q53FE4 359 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 XKR6Q5GH73 641 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 SPINK14Q6IE38 97 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 LRRC70Q7Z2Q7 622 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 LAS2Q8IYD9 372 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 NOA1Q8NC60 698 aaKnown RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 APCDD1LQ8NCL9 501 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 DNAJB8Q8NHS0 232 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 RHEBL1Q8TAI7 183 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 C16orf45Q96MC5 204 aaPredicted RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 EFCAB11Q9BUY7 163 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 HES7Q9BYE0 225 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 REXO4Q9GZR2 422 aaKnown RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 NMRAL1Q9HBL8 299 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 NINJ2Q9NZG7 142 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 NUDT4Q9NZJ9 180 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 CD274Q9NZQ7 290 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 KCMF1Q9P0J7 381 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 ZNF223Q9UK11 482 aaPredicted RBP13.92□□□□□ -0.18
CLN3-213ENST00000565047 RNF112Q9ULX5 631 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 OSGIN2Q9Y236 505 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 MMACHCQ9Y4U1 282 aa13.92□□□□□ -0.18
CLN3-213ENST00000565047 UNC79Q9P2D8 2635 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 ASPDHA6ND91 283 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 UBXN8O00124 270 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 LRRTM2O43300 516 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 RASAL1O95294 804 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 ALDOAP04075 364 aaKnown RBP13.91□□□□□ -0.18
CLN3-213ENST00000565047 PLA2G16P53816 162 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 LIM2P55344 173 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 RAB38P57729 211 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 MLF1P58340 268 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms