RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CDC7O00311 574 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 FCHO1O14526 889 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 CDC40O60508 579 aaKnown RBP eCLIP15.74■□□□□ 0.11
CLN3-211ENST00000564091 MYO1DO94832 1006 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 TPOP07202 933 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 ENO2P09104 434 aaPredicted RBP15.74■□□□□ 0.11
CLN3-211ENST00000564091 SAT1P21673 171 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 GPR85P60893 370 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 BTN3A2P78410 334 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 TLE4Q04727 773 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 PPP1R3AQ16821 1122 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 FAM45BPQ6NSW5 357 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 MEX3BQ6ZN04 569 aaKnown RBP15.74■□□□□ 0.11
CLN3-211ENST00000564091 CEP128Q6ZU80 1094 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 MDGA2Q7Z553 956 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 GALNT7Q86SF2 657 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 MARVELD2Q8N4S9 558 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 POGLUT1Q8NBL1 392 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 FAM45AQ8TCE6 357 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 ACTRT1Q8TDG2 376 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 CHTF18Q8WVB6 975 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 PDLIM2Q96JY6 352 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 OSBPL9Q96SU4 736 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 NAT9Q9BTE0 207 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 ENKD1Q9H0I2 346 aa15.74■□□□□ 0.11
CLN3-211ENST00000564091 DDX47Q9H0S4 455 aaKnown RBP15.74■□□□□ 0.11
CLN3-211ENST00000564091 PNO1Q9NRX1 252 aaKnown RBP15.74■□□□□ 0.11
CLN3-211ENST00000564091 KLF13Q9Y2Y9 288 aaPredicted RBP15.74■□□□□ 0.11
CLN3-211ENST00000564091 SCN2AQ99250 2005 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 A0A0G2JN53 185 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 GOLGA6L10A0A0M3HER8 536 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 KLRC4-KLRK1H3BQV0 150 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 PDE9AO76083 593 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 SERPINA6P08185 405 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 PPP2R1BP30154 601 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 ELK3P41970 407 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 CLCN2P51788 898 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 NR0B1P51843 470 aaKnown RBP15.73■□□□□ 0.11
CLN3-211ENST00000564091 RUNX2Q13950 521 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 C18orf21Q32NC0 220 aaPredicted RBP15.73■□□□□ 0.11
CLN3-211ENST00000564091 CMPK2Q5EBM0 449 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 C16orf47Q6ZP98 133 aaPredicted RBP15.73■□□□□ 0.11
CLN3-211ENST00000564091 CD163Q86VB7 1156 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 CYP4Z2PQ8N1L4 340 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 ARMC10Q8N2F6 343 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 TMEM156Q8N614 296 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 B3GNT7Q8NFL0 401 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 FAM57AQ8TBR7 257 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 C14orf79Q96F83 325 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 PDLIM5Q96HC4 596 aaKnown RBP15.73■□□□□ 0.11
CLN3-211ENST00000564091 WDR83Q9BRX9 315 aaKnown RBP15.73■□□□□ 0.11
CLN3-211ENST00000564091 COQ3Q9NZJ6 369 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 ZNF223Q9UK11 482 aaPredicted RBP15.73■□□□□ 0.11
CLN3-211ENST00000564091 CHMP2BQ9UQN3 213 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 KCNE2Q9Y6J6 123 aa15.73■□□□□ 0.11
CLN3-211ENST00000564091 SETD2Q9BYW2 2564 aaPredicted RBP15.73■□□□□ 0.11
CLN3-211ENST00000564091 NPEPPSL1A6NEC2 478 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 PRKNO60260 465 aaPredicted RBP15.72■□□□□ 0.11
CLN3-211ENST00000564091 ITGA10O75578 1167 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 TFEBP19484 476 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 GDF5P43026 501 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 RIPPLY3P57055 190 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 ZNF460Q14592 562 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 EID3Q8N140 333 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 SLC35F6Q8N357 371 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 ACBD4Q8NC06 268 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 TMEM52Q8NDY8 209 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 OR52N2Q8NGI0 321 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 C16orf52Q8NHV5 167 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 SREK1Q8WXA9 508 aaKnown RBP15.72■□□□□ 0.11
CLN3-211ENST00000564091 NCLNQ969V3 563 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 LIN28AQ9H9Z2 209 aaKnown RBP15.72■□□□□ 0.11
CLN3-211ENST00000564091 MMACHCQ9Y4U1 282 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 PSAT1Q9Y617 370 aa15.72■□□□□ 0.11
CLN3-211ENST00000564091 TGFBR3LH3BV60 316 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 ZNF37AP17032 561 aaPredicted RBP15.71■□□□□ 0.11
CLN3-211ENST00000564091 CAPN3P20807 821 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 IVDP26440 423 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 HNRNPFP52597 415 aaKnown RBP15.71■□□□□ 0.11
CLN3-211ENST00000564091 CDH24Q86UP0 819 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 SCUBE1Q8IWY4 988 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLN3-211ENST00000564091 RPRMLQ8N4K4 120 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 ZFP62Q8NB50 900 aaPredicted RBP15.71■□□□□ 0.11
CLN3-211ENST00000564091 CCT6BQ92526 530 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 FAR2Q96K12 515 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 EGFL8Q99944 293 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 UCK2Q9BZX2 261 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 DEFB127Q9H1M4 99 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 MCCC2Q9HCC0 563 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 PRTFDC1Q9NRG1 225 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 KCMF1Q9P0J7 381 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 CORO1CQ9ULV4 474 aaPredicted RBP15.71■□□□□ 0.11
CLN3-211ENST00000564091 CLDN16Q9Y5I7 305 aa15.71■□□□□ 0.11
CLN3-211ENST00000564091 ERI3O43414 337 aaKnown RBP15.7■□□□□ 0.1
CLN3-211ENST00000564091 HNRNPH1P31943 449 aaKnown RBP15.7■□□□□ 0.1
CLN3-211ENST00000564091 GPR143P51810 404 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 TAS2R39P59534 338 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 STXBP1P61764 594 aaKnown RBP15.7■□□□□ 0.1
CLN3-211ENST00000564091 SLC13A2Q13183 592 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms