RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 DAG1Q14118 895 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 KPNB1Q14974 876 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 ZNHIT3Q15649 155 aaPredicted RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 CEBPEQ15744 281 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 KCNJ8Q15842 424 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 GSTA3Q16772 222 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CA9Q16790 459 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 AP5B1Q2VPB7 878 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ZNF750Q32MQ0 723 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CERKLQ49MI3 558 aaPredicted RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 IQCCQ4KMZ1 466 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 RNASE12Q5GAN4 147 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 MTX3Q5HYI7 312 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ZNF667Q5HYK9 610 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 DCST1Q5T197 706 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 PDZK1Q5T2W1 519 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 PXDC1Q5TGL8 231 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MFSD14CQ5VZR4 134 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 BSPRYQ5W0U4 402 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CARD17Q5XLA6 110 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 FCRL6Q6DN72 434 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ZFP1Q6P2D0 407 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 TMEM71Q6P5X7 295 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 TMIGD1Q6UXZ0 262 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 WASH2PQ6VEQ5 465 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 DPY19L3Q6ZPD9 716 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 BBS12Q6ZW61 710 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ZNF573Q86YE8 665 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 PLD3Q8IV08 490 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CDK20Q8IZL9 346 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 C1orf52Q8N6N3 182 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 METTL25Q8N6Q8 603 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 RNF152Q8N8N0 203 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 C8orf58Q8NAV2 365 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 C17orf47Q8NEP4 570 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 OR5M1Q8NGP8 315 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CKAP2Q8WWK9 683 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 PRPF31Q8WWY3 499 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 MAFIPQ8WZ33 124 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 APBB2Q92870 758 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 TCEAL4Q96EI5 215 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MCRS1Q96EZ8 462 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 LINGO1Q96FE5 620 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 SLC41A2Q96JW4 573 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MSLNLQ96KJ4 702 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ZIM3Q96PE6 472 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 GCNAQ96QF7 691 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ABHD1Q96SE0 405 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 SYT15Q9BQS2 421 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 PIMREGQ9BSJ6 248 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 RTKNQ9BST9 563 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 KIFC1Q9BW19 673 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CACNG6Q9BXT2 260 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 DGCR6LQ9BY27 220 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 GSDMCQ9BYG8 508 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 SLC19A3Q9BZV2 496 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CIPCQ9C0C6 399 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 UPF3AQ9H1J1 476 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 GAL3ST2Q9H3Q3 398 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MUC13Q9H3R2 512 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 LRRN3Q9H3W5 708 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 IL21RQ9HBE5 538 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 RAVER2Q9HCJ3 691 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 MYOZ1Q9NP98 299 aaPredicted RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 TIGARQ9NQ88 270 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 XPNPEP1Q9NQW7 623 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MBNL1Q9NR56 388 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 CLEC5AQ9NY25 188 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 BCAP29Q9UHQ4 241 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 LEF1Q9UJU2 399 aaPredicted RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 AGO1Q9UL18 857 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 FZD10Q9ULW2 581 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ERVW-1Q9UQF0 538 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 KCNK7Q9Y2U2 307 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 ASTN2O75129 1339 aaPredicted RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 POLR3AO14802 1390 aaPredicted RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 CPSF1Q10570 1443 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 ERCC6L2Q5T890 1561 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 A0A1W2PQ72 361 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 PQLC2LA1A4F0 135 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 MEX3AA1L020 520 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 EVPLLA8MZ36 301 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 F8WDY8 70 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 H3BQF6 201 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 GRM8O00222 908 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SLC33A1O00400 549 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 CES2O00748 559 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SEPT4O43236 478 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TSPAN2O60636 221 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 OR7A10O76100 309 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 LYPLA2O95372 231 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 C22orf31O95567 290 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 F10P00742 488 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 IL1BP01584 269 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 GSTA1P08263 222 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CTXN2P0C2S0 81 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 UROSP10746 265 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 RAB3AP20336 220 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 ACVR2AP27037 513 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 PSMB6P28072 239 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms