RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PRAMEF9Q5VWM5 478 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 GTF2H2CQ6P1K8 395 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 ISLR2Q6UXK2 745 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 QSOX2Q6ZRP7 698 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 RBMXL3Q8N7X1 1067 aaKnown RBP12.62□□□□□ -0.39
CLK3-213ENST00000563842 PTGR2Q8N8N7 351 aaPredicted RBP12.62□□□□□ -0.39
CLK3-213ENST00000563842 UBLCP1Q8WVY7 318 aaPredicted RBP12.62□□□□□ -0.39
CLK3-213ENST00000563842 ATP6V1E2Q96A05 226 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 KCNC2Q96PR1 638 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 SERINC2Q96SA4 455 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 IPPKQ9H8X2 491 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 ACTR8Q9H981 624 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 SLAMF7Q9NQ25 335 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 LANCL2Q9NS86 450 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 ZNF358Q9NW07 568 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 XPR1Q9UBH6 696 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 MRPS33Q9Y291 106 aaKnown RBP12.62□□□□□ -0.39
CLK3-213ENST00000563842 TSC22D4Q9Y3Q8 395 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 TTLL8A6PVC2 850 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 MASP2O00187 686 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 CLDN4O14493 209 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 PRMT3O60678 531 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 CDC123O75794 336 aaPredicted RBP12.61□□□□□ -0.39
CLK3-213ENST00000563842 WISP1O95388 367 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 B3GALT4O96024 378 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 GSTA1P08263 222 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 PCNAP12004 261 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 TAC1P20366 129 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 GCAP28676 217 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 EEF1DP29692 281 aaKnown RBP12.61□□□□□ -0.39
CLK3-213ENST00000563842 HNRNPH1P31943 449 aaKnown RBP12.61□□□□□ -0.39
CLK3-213ENST00000563842 PIK3CBP42338 1070 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 PLA2G16P53816 162 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 MTTPP55157 894 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 OLR1P78380 273 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 RHAGQ02094 409 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 Q0VFX4 171 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 ABRAXAS2Q15018 415 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 EXT1Q16394 746 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 NADK2Q4G0N4 442 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 ABHD17CQ6PCB6 329 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 IGFL2Q6UWQ7 119 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 GOLGA7Q7Z5G4 137 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 ANKRD37Q7Z713 158 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 MYLK4Q86YV6 388 aaPredicted RBP12.61□□□□□ -0.39
CLK3-213ENST00000563842 GSPT2Q8IYD1 628 aaKnown RBP12.61□□□□□ -0.39
CLK3-213ENST00000563842 CA13Q8N1Q1 262 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 EFCAB3Q8N7B9 438 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 C7orf57Q8NEG2 295 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 OR7G3Q8NG95 312 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 PPP4R1Q8TF05 950 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 ZNF473Q8WTR7 871 aaKnown RBP12.61□□□□□ -0.39
CLK3-213ENST00000563842 PHF21BQ96EK2 531 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 CMTM7Q96FZ5 175 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 IMMP1LQ96LU5 166 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 MAGEB10Q96LZ2 347 aaPredicted RBP12.61□□□□□ -0.39
CLK3-213ENST00000563842 PTCHD1Q96NR3 888 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 LPAR4Q99677 370 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 TBCDQ9BTW9 1192 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 MS4A8Q9BY19 250 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 RBCK1Q9BYM8 510 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 PRDM9Q9NQV7 894 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 TEKT2Q9UIF3 430 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 B3GNT3Q9Y2A9 372 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 MMACHCQ9Y4U1 282 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 SPACA6W5XKT8 324 aa12.61□□□□□ -0.39
CLK3-213ENST00000563842 HECTD1Q9ULT8 2610 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 TENM4Q6N022 2769 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 H0YIV9 168 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 E2F3O00716 465 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 B4GALT2O60909 372 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 SLU7O95391 586 aaKnown RBP12.6□□□□□ -0.39
CLK3-213ENST00000563842 CLDN9O95484 217 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 ARL1P40616 181 aaPredicted RBP12.6□□□□□ -0.39
CLK3-213ENST00000563842 TSFMP43897 325 aaKnown RBP12.6□□□□□ -0.39
CLK3-213ENST00000563842 CCNG1P51959 295 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 ARFIP1P53367 373 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 RAB38P57729 211 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 OR4D2P58180 307 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 MFAP5Q13361 173 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 ESPL1Q14674 2120 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 AP5B1Q2VPB7 878 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 BTBD16Q32M84 506 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 SFT2D3Q587I9 215 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 C10orf62Q5T681 223 aaPredicted RBP12.6□□□□□ -0.39
CLK3-213ENST00000563842 SLC6A19Q695T7 634 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 PLAG1Q6DJT9 500 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 LANCL3Q6ZV70 420 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 VN1R5Q7Z5H4 357 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 IQCKQ8N0W5 287 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 L3MBTL4Q8NA19 623 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 M1APQ8TC57 530 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 QRFPRQ96P65 431 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 F2RL3Q96RI0 385 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 WDR77Q9BQA1 342 aaPredicted RBP12.6□□□□□ -0.39
CLK3-213ENST00000563842 MESP1Q9BRJ9 268 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 MFRPQ9BY79 579 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 TRIM4Q9C037 500 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 AICDAQ9GZX7 198 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 ILKAPQ9H0C8 392 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms