RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 BTG2P78543 158 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 IRF8Q02556 426 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 GUCY2DQ02846 1103 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 TGM3Q08188 693 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 DOC2AQ14183 400 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 FBXO48Q5FWF7 155 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 FCRLBQ6BAA4 426 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 LRRC70Q7Z2Q7 622 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 CCDC91Q7Z6B0 441 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 CMC1Q7Z7K0 106 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 BEST3Q8N1M1 668 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 CA13Q8N1Q1 262 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 ZNF592Q92610 1267 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 MS4A6EQ96DS6 147 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 UTP23Q9BRU9 249 aaKnown RBP15.82■□□□□ 0.12
CLK3-210ENST00000563112 CD244Q9BZW8 370 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 MMACHCQ9Y4U1 282 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 ZGRF1Q86YA3 2104 aa15.82■□□□□ 0.12
CLK3-210ENST00000563112 LRIT2A6NDA9 550 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 SUPT3HB4E1H0 165 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 B3GALT2O43825 422 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 SUPT3HO75486 399 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 RASAL1O95294 804 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 CHIT1Q13231 466 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 TRIM40Q6P9F5 258 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 ISCA2Q86U28 154 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 CRLF3Q8IUI8 442 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 MNS1Q8NEH6 495 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 OR2L5Q8NG80 312 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 DNAJB8Q8NHS0 232 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 ADAMTS18Q8TE60 1221 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 UBE2E3Q969T4 207 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 MRRFQ96E11 262 aaKnown RBP15.81■□□□□ 0.12
CLK3-210ENST00000563112 WDR34Q96EX3 536 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 SLX1AQ9BQ83 275 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 REXO4Q9GZR2 422 aaKnown RBP15.81■□□□□ 0.12
CLK3-210ENST00000563112 TSPYL1Q9H0U9 437 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 COPS7BQ9H9Q2 264 aaPredicted RBP15.81■□□□□ 0.12
CLK3-210ENST00000563112 ZDHHC18Q9NUE0 388 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 PLEKHB1Q9UF11 243 aaPredicted RBP15.81■□□□□ 0.12
CLK3-210ENST00000563112 ERRFI1Q9UJM3 462 aaPredicted RBP15.81■□□□□ 0.12
CLK3-210ENST00000563112 OSGIN2Q9Y236 505 aa15.81■□□□□ 0.12
CLK3-210ENST00000563112 MRPS33Q9Y291 106 aaKnown RBP15.81■□□□□ 0.12
CLK3-210ENST00000563112 A0A087X1B8 175 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 A0A0G2JN53 185 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 TCRBV16S1A1N1A0A5B0 115 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 SYCE1LA8MT33 242 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 C4orf51C9J302 202 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 FAM227AF5H4B4 570 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 E2F3O00716 465 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 CLDN4O14493 209 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 KERAO60938 352 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 MAOAP21397 527 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 HNRNPH1P31943 449 aaKnown RBP15.8■□□□□ 0.12
CLK3-210ENST00000563112 KCNC1P48547 511 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 PLA2G16P53816 162 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 RCN2Q14257 317 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 EFTUD2Q15029 972 aaKnown RBP eCLIP15.8■□□□□ 0.122e-7■■■■□ 20
CLK3-210ENST00000563112 TBCCQ15814 346 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 UAP1Q16222 522 aaPredicted RBP15.8■□□□□ 0.12
CLK3-210ENST00000563112 FAM83EQ2M2I3 478 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 ZNF766Q5HY98 468 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 MROH9Q5TGP6 573 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 LGI4Q8N135 537 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 HORMAD2Q8N7B1 307 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 ELP5Q8TE02 316 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 NR4A3Q92570 626 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 TAAR6Q96RI8 345 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 AICDAQ9GZX7 198 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 OPTCQ9UBM4 332 aa15.8■□□□□ 0.12
CLK3-210ENST00000563112 ZNF490Q9ULM2 529 aaPredicted RBP15.8■□□□□ 0.12
CLK3-210ENST00000563112 CENPEQ02224 2701 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 CCDC189A1A4V9 331 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 SAGE2PA6NJ88 616 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 CYSRT1A8MQ03 144 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 A8MUA0 341 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 CDK2AP1O14519 115 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 CD46P15529 392 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 CASP2P42575 452 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 MTTPP55157 894 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 PER3P56645 1201 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 HSD17B7P56937 341 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 RAB38P57729 211 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 OC90Q02509 493 aaPredicted RBP15.79■□□□□ 0.12
CLK3-210ENST00000563112 DLG1Q12959 904 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 TUBA3CQ13748 450 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 RUNX2Q13950 521 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 ADPRMQ3LIE5 342 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 ZNF324BQ6AW86 544 aaPredicted RBP15.79■□□□□ 0.12
CLK3-210ENST00000563112 TUBA3EQ6PEY2 450 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 RPS19BP1Q86WX3 136 aaKnown RBP15.79■□□□□ 0.12
CLK3-210ENST00000563112 MMGT1Q8N4V1 131 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 SRFBP1Q8NEF9 429 aaKnown RBP15.79■□□□□ 0.12
CLK3-210ENST00000563112 KCTD4Q8WVF5 259 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 NXNL1Q96CM4 212 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 SERINC2Q96SA4 455 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 ATOH8Q96SQ7 321 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 ROGDIQ9GZN7 287 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 CDCP1Q9H5V8 836 aa15.79■□□□□ 0.12
CLK3-210ENST00000563112 NECTIN3Q9NQS3 549 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms