RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 WDR74Q6RFH5 385 aaPredicted RBP10.68□□□□□ -0.7
USP3-218ENST00000560202 DBX2Q6ZNG2 339 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 RETREG3Q86VR2 466 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 MCATQ8IVS2 390 aaKnown RBP10.68□□□□□ -0.7
USP3-218ENST00000560202 CARFQ8N187 725 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 ZNF655Q8N720 491 aaPredicted RBP10.68□□□□□ -0.7
USP3-218ENST00000560202 STARD8Q92502 1023 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 GAL3ST3Q96A11 431 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 TESCQ96BS2 214 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 TEFMQ96QE5 360 aaKnown RBP10.68□□□□□ -0.7
USP3-218ENST00000560202 CCDC3Q9BQI4 270 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 LRFN3Q9BTN0 628 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 TBCDQ9BTW9 1192 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 CADM1Q9BY67 442 aaKnown RBP10.68□□□□□ -0.7
USP3-218ENST00000560202 CHRNA10Q9GZZ6 450 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 MYNNQ9NPC7 610 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 PRDM7Q9NQW5 492 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 TMEM9Q9P0T7 183 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 STOML1Q9UBI4 398 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 BTBD3Q9Y2F9 522 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 MN1Q10571 1320 aaPredicted RBP10.68□□□□□ -0.7
USP3-218ENST00000560202 ADAMTS9Q9P2N4 1935 aa10.68□□□□□ -0.7
USP3-218ENST00000560202 URADA6NGE7 173 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 CASC3O15234 703 aaKnown RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 GSC2O15499 205 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 CFLARO15519 480 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 ZSCAN9O15535 394 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 HCRTR1O43613 425 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 SRPX2O60687 465 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 ZBTB11O95625 1053 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 PGRP06401 933 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 HIST1H1TP22492 207 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 MLLT3P42568 568 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 GRK6P43250 576 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 TSFMP43897 325 aaKnown RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 DUSP3P51452 185 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 MAPK12P53778 367 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 VSX2P58304 361 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 TAS2R50P59544 299 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 TLR1Q15399 786 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 DEFB110Q30KQ9 67 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 INAVAQ3KP66 663 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 C16orf89Q6UX73 402 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 ZNF793Q6ZN11 406 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 DGLUCYQ7Z3D6 616 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 DSELQ8IZU8 1212 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 TMEM132CQ8N3T6 1108 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 CSNK1A1LQ8N752 337 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 AMER3Q8N944 861 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 PCYOX1LQ8NBM8 494 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 PRSS33Q8NF86 280 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 UTP15Q8TED0 518 aaKnown RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 PRRX2Q99811 253 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 KCNH6Q9H252 994 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 DCLRE1BQ9H816 532 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 PDE7BQ9NP56 450 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 SOHLH2Q9NX45 425 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 NDE1Q9NXR1 346 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 SEMA5BQ9P283 1151 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 MAP10Q9P2G4 905 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 PDP2Q9P2J9 529 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 SCOCQ9UIL1 159 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 LEF1Q9UJU2 399 aaPredicted RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 MAPRE3Q9UPY8 281 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 LRCH1Q9Y2L9 728 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 WBP11Q9Y2W2 641 aaKnown RBP10.67□□□□□ -0.7
USP3-218ENST00000560202 FRYLO94915 3013 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 MYO15AQ9UKN7 3530 aa10.67□□□□□ -0.7
USP3-218ENST00000560202 A0A0A6YYD5 115 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 GABRR3A8MPY1 467 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 SCAMP2O15127 329 aaKnown RBP10.66□□□□□ -0.7
USP3-218ENST00000560202 MAP3K7O43318 606 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 TMPRSS11DO60235 418 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 IL3P08700 152 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 ZNF888P0CJ79 500 aaPredicted RBP10.66□□□□□ -0.7
USP3-218ENST00000560202 SMIM10L1P0DMW3 83 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 COX7A2P14406 83 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 ATP5A1P25705 553 aaKnown RBP10.66□□□□□ -0.7
USP3-218ENST00000560202 S100A3P33764 101 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 HPCAL1P37235 193 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 GSTM5P46439 218 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 CCL7P80098 99 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 SRSF11Q05519 484 aaKnown RBP10.66□□□□□ -0.7
USP3-218ENST00000560202 C2orf80Q0P641 193 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 SF3A2Q15428 464 aaKnown RBP10.66□□□□□ -0.7
USP3-218ENST00000560202 UGT8Q16880 541 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 DPY19L1Q2PZI1 675 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 PGS1Q32NB8 556 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 PAGE3Q5JUK9 113 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 SNAP47Q5SQN1 464 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 FAM71E1Q6IPT2 247 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 TMEM214Q6NUQ4 689 aaKnown RBP10.66□□□□□ -0.7
USP3-218ENST00000560202 TMEM71Q6P5X7 295 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 SLC2A7Q6PXP3 512 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 HACD2Q6Y1H2 254 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 PRR23CQ6ZRP0 262 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 IKBIPQ70UQ0 350 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 ABHD13Q7L211 337 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 PRSS42Q7Z5A4 293 aa10.66□□□□□ -0.7
USP3-218ENST00000560202 DEFB107AQ8IZN7 70 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms