RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 VPS50Q96JG6 964 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 MYCBPQ99417 103 aaPredicted RBP17.01■□□□□ 0.31
SNX1-208ENST00000559844 MENTQ9BUN1 341 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 SPATA9Q9BWV2 254 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 RHBGQ9H310 441 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 OR51B5Q9H339 312 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 OSGEPL1Q9H4B0 414 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 NT5DC2Q9H857 520 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 CAPN10Q9HC96 672 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 MYNNQ9NPC7 610 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 DCAF13Q9NV06 445 aaKnown RBP17.01■□□□□ 0.31
SNX1-208ENST00000559844 ZNF639Q9UID6 485 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 GMEB2Q9UKD1 530 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 PCDHB11Q9Y5F2 797 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 GMEB1Q9Y692 573 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 CFAP20Q9Y6A4 193 aaKnown RBP17.01■□□□□ 0.31
SNX1-208ENST00000559844 CABIN1Q9Y6J0 2220 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 RNASET2O00584 256 aaKnown RBP17■□□□□ 0.31
SNX1-208ENST00000559844 ENGP17813 658 aa17■□□□□ 0.31
SNX1-208ENST00000559844 GPX2P18283 190 aa17■□□□□ 0.31
SNX1-208ENST00000559844 RPL10P27635 214 aaKnown RBP17■□□□□ 0.31
SNX1-208ENST00000559844 CTSKP43235 329 aa17■□□□□ 0.31
SNX1-208ENST00000559844 CCR8P51685 355 aa17■□□□□ 0.31
SNX1-208ENST00000559844 BNC1Q01954 994 aa17■□□□□ 0.31
SNX1-208ENST00000559844 RBBP5Q15291 538 aaKnown RBP17■□□□□ 0.31
SNX1-208ENST00000559844 PYCR3Q53H96 274 aa17■□□□□ 0.31
SNX1-208ENST00000559844 NHSL2Q5HYW2 709 aa17■□□□□ 0.31
SNX1-208ENST00000559844 CARM1Q86X55 608 aa17■□□□□ 0.31
SNX1-208ENST00000559844 EID3Q8N140 333 aa17■□□□□ 0.31
SNX1-208ENST00000559844 C2orf73Q8N5S3 287 aaPredicted RBP17■□□□□ 0.31
SNX1-208ENST00000559844 ABHD11Q8NFV4 315 aa17■□□□□ 0.31
SNX1-208ENST00000559844 MTERF3Q96E29 417 aa17■□□□□ 0.31
SNX1-208ENST00000559844 INSM2Q96T92 566 aaPredicted RBP17■□□□□ 0.31
SNX1-208ENST00000559844 ANKRD60Q9BZ19 345 aa17■□□□□ 0.31
SNX1-208ENST00000559844 ZNF696Q9H7X3 374 aa17■□□□□ 0.31
SNX1-208ENST00000559844 CAAP1Q9H8G2 361 aa17■□□□□ 0.31
SNX1-208ENST00000559844 KLF15Q9UIH9 416 aa17■□□□□ 0.31
SNX1-208ENST00000559844 SLC6A14Q9UN76 642 aa17■□□□□ 0.31
SNX1-208ENST00000559844 ANKDD1BA6NHY2 528 aa17■□□□□ 0.31
SNX1-208ENST00000559844 PRSS23O95084 383 aa17■□□□□ 0.31
SNX1-208ENST00000559844 CCNDBP1O95273 360 aa17■□□□□ 0.31
SNX1-208ENST00000559844 LINGO3P0C6S8 592 aa17■□□□□ 0.31
SNX1-208ENST00000559844 TCEA2Q15560 299 aa17■□□□□ 0.31
SNX1-208ENST00000559844 CPZQ66K79 652 aa17■□□□□ 0.31
SNX1-208ENST00000559844 IKBIPQ70UQ0 350 aa17■□□□□ 0.31
SNX1-208ENST00000559844 CLECL1Q8IZS7 167 aa17■□□□□ 0.31
SNX1-208ENST00000559844 PUM2Q8TB72 1066 aaKnown RBP eCLIP17■□□□□ 0.311e-7■■□□□ 14.4
SNX1-208ENST00000559844 SCARF2Q96GP6 870 aaPredicted RBP17■□□□□ 0.31
SNX1-208ENST00000559844 ACAT2Q9BWD1 397 aa17■□□□□ 0.31
SNX1-208ENST00000559844 FAM192AQ9GZU8 254 aa17■□□□□ 0.31
SNX1-208ENST00000559844 ZNF282Q9UDV7 671 aaPredicted RBP17■□□□□ 0.31
SNX1-208ENST00000559844 VPS4AQ9UN37 437 aa17■□□□□ 0.31
SNX1-208ENST00000559844 WDR37Q9Y2I8 494 aa17■□□□□ 0.31
SNX1-208ENST00000559844 GPSM3Q9Y4H4 160 aa17■□□□□ 0.31
SNX1-208ENST00000559844 DGKBQ9Y6T7 804 aa17■□□□□ 0.31
SNX1-208ENST00000559844 WDR87Q6ZQQ6 2873 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 OTOGLQ3ZCN5 2332 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 PDLIM1O00151 329 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 SEMA3DO95025 777 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 RASGRP1O95267 797 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 REEP5Q00765 189 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 PLA2G2CQ5R387 149 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 TCEAL6Q6IPX3 200 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 ANKRD26P1Q6NSI1 321 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 ZNF740Q8NDX6 193 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 C16orf78Q8WTQ4 265 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 TFAP2CQ92754 450 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 TCEAL3Q969E4 200 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 OR2M4Q96R27 311 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 TCEAL2Q9H3H9 227 aaPredicted RBP16.99■□□□□ 0.31
SNX1-208ENST00000559844 MVB12BQ9H7P6 319 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 SH3BP4Q9P0V3 963 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 DNAJB9Q9UBS3 223 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 SAMD4AQ9UPU9 718 aaKnown RBP16.99■□□□□ 0.31
SNX1-208ENST00000559844 KCNK6Q9Y257 313 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 BTBD3Q9Y2F9 522 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 DNAH14Q0VDD8 3507 aa16.99■□□□□ 0.31
SNX1-208ENST00000559844 ARHGEF17Q96PE2 2063 aaPredicted RBP16.99■□□□□ 0.31
SNX1-208ENST00000559844 PRR19A6NJB7 356 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 KDM1AO60341 852 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 SERPINA1P01009 418 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 TNFP01375 233 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 MT-ND1P03886 318 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 CSF2P04141 144 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 NME1P15531 152 aaKnown RBP16.98■□□□□ 0.31
SNX1-208ENST00000559844 ZNF23P17027 643 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 JUNDP17535 347 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 PDE7AQ13946 482 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 DUS1LQ6P1R4 473 aaKnown RBP16.98■□□□□ 0.31
SNX1-208ENST00000559844 ENPP6Q6UWR7 440 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 GPR155Q7Z3F1 870 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 WDR48Q8TAF3 677 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 NETO1Q8TDF5 533 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 PPCDCQ96CD2 204 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 CAMK1GQ96NX5 476 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 APOBEC3BQ9UH17 382 aaKnown RBP16.98■□□□□ 0.31
SNX1-208ENST00000559844 WBP11Q9Y2W2 641 aaKnown RBP16.98■□□□□ 0.31
SNX1-208ENST00000559844 A0A1W2PPV9 198 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 EI24O14681 340 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 KHNYNO15037 678 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms