RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 SERTM1A2A2V5 107 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 RTCAO00442 366 aaKnown RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 SNUPNO95149 360 aaKnown RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 FGF4P08620 206 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 CHN1P15882 459 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 MTTPP55157 894 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 BTN3A2P78410 334 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 TLE3Q04726 772 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 STX3Q13277 289 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ABRAXAS2Q15018 415 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 SYT16Q17RD7 645 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 SH2D4BQ5SQS7 431 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 MLIPQ5VWP3 458 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ZNF793Q6ZN11 406 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 LRRC69Q6ZNQ3 347 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 RNF165Q6ZSG1 346 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 TRIM42Q8IWZ5 723 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 GBP7Q8N8V2 638 aaPredicted RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 OR5T3Q8NGG3 340 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 FAR2Q96K12 515 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 CNTNAP3BQ96NU0 1288 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 CCNL2Q96S94 520 aaPredicted RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 SORT1Q99523 831 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ZNF717Q9BY31 904 aaPredicted RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 CNTNAP3Q9BZ76 1288 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ACPTQ9BZG2 426 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ROGDIQ9GZN7 287 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 C20orf27Q9GZN8 174 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ACTL8Q9H568 366 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ZNF395Q9H8N7 513 aaPredicted RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 WDR54Q9H977 334 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 COPS7BQ9H9Q2 264 aaPredicted RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 CLK4Q9HAZ1 481 aaKnown RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 PRDM7Q9NQW5 492 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 TRPC4Q9UBN4 977 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 ZNF282Q9UDV7 671 aaPredicted RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 KCND3Q9UK17 655 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 NXT1Q9UKK6 140 aaKnown RBP20.52■□□□□ 0.88
SNX1-206ENST00000559389 PADI2Q9Y2J8 665 aa20.52■□□□□ 0.88
SNX1-206ENST00000559389 VSTM2BA6NLU5 285 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 TMEM233B4DJY2 109 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 WT1P19544 449 aaPredicted RBP20.51■□□□□ 0.87
SNX1-206ENST00000559389 CERS1P27544 350 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 PTPN4P29074 926 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 SERPINB3P29508 390 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 SSR2P43308 183 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 TSFMP43897 325 aaKnown RBP20.51■□□□□ 0.87
SNX1-206ENST00000559389 SLC1A6P48664 564 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 RPS15P62841 145 aaKnown RBP20.51■□□□□ 0.87
SNX1-206ENST00000559389 OLR1P78380 273 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 NKG7Q16617 165 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 ZC3H7AQ8IWR0 971 aaKnown RBP20.51■□□□□ 0.87
SNX1-206ENST00000559389 HOMEZQ8IX15 550 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 AGR3Q8TD06 166 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 RGMAQ96B86 450 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 SERINC2Q96SA4 455 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 SPSB2Q99619 263 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 MKKSQ9NPJ1 570 aaPredicted RBP20.51■□□□□ 0.87
SNX1-206ENST00000559389 C14orf105Q9NVL8 296 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 HAO1Q9UJM8 370 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 ZMIZ1Q9ULJ6 1067 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 SLC12A4Q9UP95 1085 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 FARSAQ9Y285 508 aaKnown RBP20.51■□□□□ 0.87
SNX1-206ENST00000559389 TRAF6Q9Y4K3 522 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 DNAJC15Q9Y5T4 150 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 NUP210LQ5VU65 1888 aa20.51■□□□□ 0.87
SNX1-206ENST00000559389 KLF11O14901 512 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 KLF7O75840 302 aaPredicted RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 CD63P08962 238 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 HIST1H1TP22492 207 aaPredicted RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 ATP5A1P25705 553 aaKnown RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 RPS18P62269 152 aaKnown RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 SCIMPQ6UWF3 145 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 TRIM46Q7Z4K8 759 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 CLYBLQ8N0X4 340 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 SHISA5Q8N114 240 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 OR51Q1Q8NH59 317 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 STT3BQ8TCJ2 826 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 STARD8Q92502 1023 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 SLC45A3Q96JT2 553 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 SORBS1Q9BX66 1292 aaKnown RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 NPLQ9BXD5 320 aaPredicted RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 MRPL1Q9BYD6 325 aaKnown RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 TGIF2Q9GZN2 237 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 INTS9Q9NV88 658 aaKnown RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 ZDHHC2Q9UIJ5 367 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 TCFL5Q9UL49 500 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 FIS1Q9Y3D6 152 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 RAP2CQ9Y3L5 183 aa20.5■□□□□ 0.87
SNX1-206ENST00000559389 MRPS18BQ9Y676 258 aaKnown RBP20.5■□□□□ 0.87
SNX1-206ENST00000559389 IGF2RP11717 2491 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 CHST10O43529 356 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 B3GALT2O43825 422 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 DNAJB6O75190 326 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 SNNO75324 88 aaPredicted RBP20.49■□□□□ 0.87
SNX1-206ENST00000559389 CHEK2O96017 543 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 BSGP35613 385 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 FOXL2P58012 376 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 OCA2Q04671 838 aa20.49■□□□□ 0.87
SNX1-206ENST00000559389 TBL3Q12788 808 aaKnown RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms