RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 DNA2P51530 1060 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 CLCN4P51793 760 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 GEMP55040 296 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 NLRP11P59045 1033 aaKnown RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 SSTP61278 116 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 SP3Q02447 781 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 LRRC74AQ0VAA2 488 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 MRPL28Q13084 256 aaKnown RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 PDIA5Q14554 519 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 SPHARQ15513 63 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 TAF13Q15543 124 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 USH1GQ495M9 461 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 GPAT3Q53EU6 434 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF776Q68DI1 518 aaPredicted RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 WBP2NLQ6ICG8 309 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 DHRS11Q6UWP2 260 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF852Q6ZMS4 543 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 OTUD6AQ7L8S5 288 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 TMEM110Q86TL2 294 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF444Q8N0Y2 327 aaPredicted RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 FBXL14Q8N1E6 418 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 TMEM99Q8N816 258 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 MINDY2Q8NBR6 621 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 CLEC18CQ8NCF0 446 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 OR7A2PQ8NGA2 310 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 SHC3Q92529 594 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ZG16BQ96DA0 208 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 PHF21BQ96EK2 531 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 MRPL53Q96EL3 112 aaKnown RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 CCDC51Q96ER9 411 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 GPR137Q96N19 417 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF583Q96ND8 569 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 CDCA3Q99618 268 aaPredicted RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 PIGQQ9BRB3 760 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 RHNO1Q9BSD3 238 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 TPPP3Q9BW30 176 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ZNF416Q9BWM5 594 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 FTHL17Q9BXU8 183 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 MTMR12Q9C0I1 747 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 NT5C3AQ9H0P0 336 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 EBF2Q9HAK2 575 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 YAE1D1Q9NRH1 226 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 HOMER3Q9NSC5 361 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 DDX28Q9NUL7 540 aaKnown RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 RNF186Q9NXI6 227 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 C19orf25Q9UFG5 118 aaPredicted RBP2.84□□□□□ -1.95
TRAV28-201ENST00000557548 IL36AQ9UHA7 158 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 LAMP5Q9UJQ1 280 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 PILRAQ9UKJ1 303 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ERVK-19Q9WJR5 959 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 ATG4BQ9Y4P1 393 aa2.84□□□□□ -1.95
TRAV28-201ENST00000557548 EIF4G1Q04637 1599 aaKnown RBP2.83□□□□□ -1.96
TRAV28-201ENST00000557548 SAA2-SAA4A0A096LPE2 208 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 IGLV9-49A0A0B4J1Y8 123 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 CLRN2A0PK11 232 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 MTMR11A4FU01 709 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 A8MVM7 634 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 FAM25EA8MYX2 175 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 SNURFLB1AK76 121 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 TULP2O00295 520 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 E2F3O00716 465 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 ATP6V0E1O15342 81 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 GMFGO60234 142 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 NME2P1O60361 137 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 SYNGR4O95473 234 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 CPNE6O95741 557 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 EPOP01588 193 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 MT-ND2P03891 347 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 GSTA2P09210 222 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 CALCBP10092 127 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 EPB41P11171 864 aaKnown RBP2.83□□□□□ -1.96
TRAV28-201ENST00000557548 PDHBP11177 359 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 RALAP11233 206 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 FGF5P12034 268 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 ANPEPP15144 967 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 HNRNPA2B1P22626 353 aaKnown RBP2.83□□□□□ -1.96
TRAV28-201ENST00000557548 CA6P23280 308 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 CD38P28907 300 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 PRDX2P32119 198 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 SLC1A3P43003 542 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 NR4A2P43354 598 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 ACTR1AP61163 376 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 MYBPC1Q00872 1141 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 MYL7Q01449 175 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 GAGE5Q13069 117 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 GAGE6Q13070 117 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 SGCGQ13326 291 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 GPR50Q13585 617 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 ITGA9Q13797 1035 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 CEACAM7Q14002 265 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 RFTN1Q14699 578 aaPredicted RBP2.83□□□□□ -1.96
TRAV28-201ENST00000557548 HEPACAMQ14CZ8 416 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 TWIST1Q15672 202 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 ZKSCAN8Q15776 578 aaPredicted RBP2.83□□□□□ -1.96
TRAV28-201ENST00000557548 EXT1Q16394 746 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 C9orf50Q5SZB4 431 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 PDSS1Q5T2R2 415 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 LYPLAL1Q5VWZ2 237 aa2.83□□□□□ -1.96
TRAV28-201ENST00000557548 SLC27A4Q6P1M0 643 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms