RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HMGCRP04035 888 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 ENGP17813 658 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 APEX1P27695 318 aaKnown RBP13.3□□□□□ -0.28
SHMT2-226ENST00000556825 NOVP48745 357 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 NUDT6P53370 316 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 BCL2L15Q5TBC7 163 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 CLEC6AQ6EIG7 209 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 ZFP82Q8N141 532 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 DNAJC5GQ8N7S2 189 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 AKT1S1Q96B36 256 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 SLC22A18Q96BI1 424 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 CCDC17Q96LX7 622 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 CCDC115Q96NT0 180 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 PKMYT1Q99640 499 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 OPA3Q9H6K4 179 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 C11orf16Q9NQ32 467 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 EIF2B3Q9NR50 452 aaKnown RBP13.3□□□□□ -0.28
SHMT2-226ENST00000556825 GDE1Q9NZC3 331 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF451Q9Y4E5 1061 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 PPP2R3BQ9Y5P8 575 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 POM121CA8CG34 1229 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SIGLEC5O15389 551 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 STSP08842 583 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 HOXC4P09017 264 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PAMP19021 973 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 HOXA9P31269 272 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 VSX2P58304 361 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 RPP30P78346 268 aaKnown RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 TNFRSF17Q02223 184 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SIGLEC14Q08ET2 396 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 IRF4Q15306 451 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 DDI2Q5TDH0 399 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 TMEM88Q6PEY1 159 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PDZD9Q8IXQ8 264 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 OR1S1Q8NH92 325 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 OR2M2Q96R28 347 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 MGLLQ99685 303 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 ZPBPQ9BS86 351 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 NTMT1Q9BV86 223 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 OR51J1Q9H342 316 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PPP1R3EQ9H7J1 279 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 EXOSC4Q9NPD3 245 aaKnown RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 ZMIZ1Q9ULJ6 1067 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PCDHGC4Q9Y5F7 938 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PCDHGA6Q9Y5G7 932 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PCDHGA5Q9Y5G8 931 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PCDHGA1Q9Y5H4 931 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF670-ZNF695F2Z2N8 137 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 TEX46H3BTG2 121 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PER2O15055 1255 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SDC3O75056 442 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 ULK1O75385 1050 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 OR4F21O95013 312 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PEX11BO96011 259 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SLC10A3P09131 477 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SAT1P21673 171 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 LCN1P31025 176 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 GMPSP49915 693 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 RCAN2Q14206 197 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 EIF4HQ15056 248 aaKnown RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SSX1Q16384 188 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 EXOC3L2Q2M3D2 409 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 CCDC157Q569K6 752 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 BSPRYQ5W0U4 402 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 DHRS7BQ6IAN0 325 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 OR4F3Q6IEY1 312 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 WASH2PQ6VEQ5 465 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 WDTC1Q8N5D0 677 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 KDF1Q8NAX2 398 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 TMIEQ8NEW7 156 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 C9orf43Q8TAL5 461 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF669Q96BR6 464 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 PABPC5Q96DU9 382 aaKnown RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 MS4A3Q96HJ5 214 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 KCTD15Q96SI1 283 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SPSB2Q99619 263 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 SOSTQ9BQB4 213 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 TAPBPLQ9BX59 468 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 CASS4Q9NQ75 786 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 CLCA2Q9UQC9 943 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 MED16Q9Y2X0 877 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 DHRS7Q9Y394 339 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 ANKRD31Q8N7Z5 1873 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 FOCADQ5VW36 1801 aa13.29□□□□□ -0.28
SHMT2-226ENST00000556825 FAM221BA6H8Z2 402 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ANXA2P2A6NMY6 339 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ISM1B1AKI9 464 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 FPGTO14772 594 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ATG7O95352 703 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 S1PR4O95977 384 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 RD3LP0DJH9 198 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CBR1P16152 277 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 POU3F2P20265 443 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 AVPR1AP37288 418 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 INPP1P49441 399 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 NR6A1Q15406 480 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF628Q5EBL2 1059 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 FAM171A1Q5VUB5 890 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CPZQ66K79 652 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 PHYKPLQ8IUZ5 450 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms