RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 PIN1Q13526 163 aaPredicted RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 PCOLCEQ15113 449 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 RPS6KA1Q15418 735 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 CEBPEQ15744 281 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 HKDC1Q2TB90 917 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 KLHL38Q2WGJ6 581 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ACSBG2Q5FVE4 666 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ABHD17BQ5VST6 288 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 SUSD1Q6UWL2 747 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 CENPUQ71F23 418 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ZC3H7AQ8IWR0 971 aaKnown RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 REXO1L1PQ8IX06 675 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 SHISA5Q8N114 240 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ZNF480Q8WV37 535 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 MAIP1Q8WWC4 291 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ASB11Q8WXH4 323 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 KCNJ9Q92806 393 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 CCDC140Q96MF4 163 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 GPR137Q96N19 417 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 SIGLEC12Q96PQ1 595 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 EBNA1BP2Q99848 306 aaKnown RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 TUBB6Q9BUF5 446 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ACAT2Q9BWD1 397 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 UCK2Q9BZX2 261 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 IFT22Q9H7X7 185 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 SSU72Q9NP77 194 aaKnown RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 HOMER3Q9NSC5 361 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 SYBUQ9NX95 663 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 STMN3Q9NZ72 180 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ZNF835Q9Y2P0 537 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 GTF3C1Q12789 2109 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 FAM237BA0A1B0GVD1 139 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 MAGEB16A2A368 324 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 NSA2O95478 260 aaKnown RBP9.42□□□□□ -0.9
SCFD1-220ENST00000556486 HEXBP07686 556 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 MLNP12872 115 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 NID1P14543 1247 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 PAMP19021 973 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 CHRM3P20309 590 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 HOXC12P31275 282 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 ALDH6A1Q02252 535 aaKnown RBP9.42□□□□□ -0.9
SCFD1-220ENST00000556486 KCNJ11Q14654 390 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 SYT16Q17RD7 645 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 TTLL9Q3SXZ7 439 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 PLAG1Q6DJT9 500 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 NEPROQ6NW34 567 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 H3F3CQ6NXT2 135 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 CEP128Q6ZU80 1094 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 ZBTB46Q86UZ6 589 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 LMNTD2Q8IXW0 634 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 BEST3Q8N1M1 668 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 OR2W6PQ8NHA6 318 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 GIMAP7Q8NHV1 300 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 EDARADDQ8WWZ3 215 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 RERGQ96A58 199 aaPredicted RBP9.42□□□□□ -0.9
SCFD1-220ENST00000556486 MMABQ96EY8 250 aaPredicted RBP9.42□□□□□ -0.9
SCFD1-220ENST00000556486 PKP4Q99569 1192 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 FAM129AQ9BZQ8 928 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 GALPQ9UBC7 116 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 TNFRSF10DQ9UBN6 386 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 TAC3Q9UHF0 121 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 TEKT2Q9UIF3 430 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 CRYL1Q9Y2S2 319 aa9.42□□□□□ -0.9
SCFD1-220ENST00000556486 INTS1Q8N201 2190 aaKnown RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 AKAP6Q13023 2319 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 A0A0A6YYC8 382 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 TCRBV7S3A2A0A539 114 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 GOLGA8KD6RF30 607 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 GOLGA8TH3BQL2 631 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 I3L1I5 382 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 ADAM10O14672 748 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 P2RX6O15547 441 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 KIF5CO60282 957 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 SEC24DO94855 1032 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 FGGP02679 453 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 ANXA5P08758 320 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 MPC1LP0DKB6 136 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 C8orf89P0DMQ9 161 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 MYBL2P10244 700 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 MAGEA3P43357 314 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 SARNPP82979 210 aaKnown RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 MYBPHQ13203 477 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 SNTB1Q13884 538 aaKnown RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 NDUFA9Q16795 377 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 CES3Q6UWW8 571 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 CYHR1Q6ZMK1 362 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 Q6ZPB1 254 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 VN1R4Q7Z5H5 301 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 CAND1Q86VP6 1230 aaKnown RBP9.41□□□□□ -0.9
SCFD1-220ENST00000556486 DOLPP1Q86YN1 238 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 OTUD6BQ8N6M0 293 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 ACBD4Q8NC06 268 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 PWWP2AQ96N64 755 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 ZNF559Q9BR84 538 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 VN1R1Q9GZP7 353 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 PCYOX1Q9UHG3 505 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 MKL2Q9ULH7 1088 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 GUCA1BQ9UMX6 200 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 DHRS7Q9Y394 339 aa9.41□□□□□ -0.9
SCFD1-220ENST00000556486 TRAF6Q9Y4K3 522 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms