RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 LGI2Q8N0V4 545 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 OR8H3Q8N146 312 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 BMPERQ8N8U9 685 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TMEM105Q8N8V8 129 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 OR11H4Q8NGC9 324 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GOT1L1Q8NHS2 421 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 VANGL1Q8TAA9 524 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ACER1Q8TDN7 264 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 LRRC8CQ8TDW0 803 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 FCAMRQ8WWV6 532 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TM9SF4Q92544 642 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TMEM143Q96AN5 459 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 UHRF2Q96PU4 802 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 PLEKHF1Q96S99 279 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 CITED2Q99967 270 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 URM1Q9BTM9 101 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 THUMPD3Q9BV44 507 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GTPBP2Q9BX10 602 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 PANK2Q9BZ23 570 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 PRRG4Q9BZD6 226 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 RPAP3Q9H6T3 665 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GRPEL1Q9HAV7 217 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TRPV4Q9HBA0 871 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 XAB2Q9HCS7 855 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 DNAJC4Q9NNZ3 241 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TXNDC16Q9P2K2 825 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GTF3C4Q9UKN8 822 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 RIPK3Q9Y572 518 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 POMT1Q9Y6A1 747 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 MYH4Q9Y623 1939 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 MGAQ8IWI9 3026 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ITPR1Q14643 2758 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ITPR3Q14573 2671 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 SPTAN1Q13813 2472 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ACACAQ13085 2346 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 MYH7P12883 1935 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 MIA3Q5JRA6 1907 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 MROH7Q68CQ1 1323 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 A0A1W2PPK0 400 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 CASTOR2A6NHX0 329 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ENO4A6NNW6 628 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 SMIM1B2RUZ4 78 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 SLC22A2O15244 555 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ATP6V0E1O15342 81 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 PI15O43692 258 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 LUC7L3O95232 432 aaKnown RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 MOCS3O95396 460 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FRMD6-AS1P0C7T7 363 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 TCF4P15884 667 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 CA6P23280 308 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ADORA1P30542 326 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 TLX1P31314 330 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 CEACAM8P31997 349 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 PRKCIP41743 596 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ALDH3A2P51648 485 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 NAGLUP54802 743 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 MAZP56270 477 aaKnown RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 LINC01547P58512 204 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 B3GALT5-AS1P59052 145 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 KRTAP10-12P60413 245 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 CCNA1P78396 465 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 IRX6P78412 446 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 SCN1BQ07699 218 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 KLC1Q07866 573 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 TAF10Q12962 218 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 NPTX1Q15818 432 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 UGCGQ16739 394 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 PHKG1Q16816 387 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 UGP2Q16851 508 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 OTUD3Q5T2D3 398 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FAM91A1Q658Y4 838 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 CEACAM20Q6UY09 585 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 RBMS3Q6XE24 437 aaKnown RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 MARK2Q7KZI7 788 aaKnown RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 SPATA19Q7Z5L4 167 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ADGRD2Q7Z7M1 963 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ISCA2Q86U28 154 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 RPAINQ86UA6 219 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 RTN4RL2Q86UN3 420 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 DCUN1D3Q8IWE4 304 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FBXO16Q8IX29 292 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 EID3Q8N140 333 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 NDUFAF2Q8N183 169 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 RYBPQ8N488 228 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ZNF383Q8NA42 475 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 OR4K1Q8NGD4 311 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 C9orf43Q8TAL5 461 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 PHLDA1Q8WV24 401 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 KCNE4Q8WWG9 221 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 NSMAFQ92636 917 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 PROX1Q92786 737 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FAM71F1Q96KD3 344 aaPredicted RBP1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FAM20AQ96MK3 541 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FNBP1Q96RU3 617 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 SLC2A11Q9BYW1 496 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 Q9H8V8 135 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 GSN-AS1Q9NRJ2 163 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FGF21Q9NSA1 209 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 ADPRHL2Q9NX46 363 aa1.37□□□□□ -2.19
PRPF39-208ENST00000554785 FLRT3Q9NZU0 649 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms