RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 COILP38432 576 aaPredicted RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 SOX3P41225 446 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 DNASE1L1P49184 302 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 ZNF136P52737 540 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 EIF3BP55884 814 aaKnown RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 WNT3P56703 355 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 CDH17Q12864 832 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 KLHL38Q2WGJ6 581 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 DEFB134Q4QY38 66 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 KIAA0930Q6ICG6 404 aaPredicted RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 AFAP1L2Q8N4X5 818 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 FAM136AQ96C01 138 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 BPIFA3Q9BQP9 254 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 GOLPH3Q9H4A6 298 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 TUBA8Q9NY65 449 aaPredicted RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 SAMD15Q9P1V8 674 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 AHRRA9YTQ3 701 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 KDM4EB2RXH2 506 aaPredicted RBP12.76□□□□□ -0.37
PRPF39-204ENST00000553605 EEF1E1-BLOC1S5C9J1V9 151 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 EEF1E1O43324 174 aaKnown RBP12.76□□□□□ -0.37
PRPF39-204ENST00000553605 ZNF189O75820 626 aaPredicted RBP12.76□□□□□ -0.37
PRPF39-204ENST00000553605 FPR1P21462 350 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 AGFG1P52594 562 aaKnown RBP12.76□□□□□ -0.37
PRPF39-204ENST00000553605 SKP1P63208 163 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 KRTAP1-1Q07627 177 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 TCEAL1Q15170 157 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 P3H1Q32P28 736 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 ACSBG2Q5FVE4 666 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 CTSL3PQ5NE16 218 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 HECTD2Q5U5R9 776 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 HEPHL1Q6MZM0 1159 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 RTL4Q6ZR62 310 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 ZNF740Q8NDX6 193 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 NCLNQ969V3 563 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 ISL2Q96A47 359 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 RASL10BQ96S79 203 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 CCL19Q99731 98 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 AARSD1Q9BTE6 412 aaKnown RBP12.76□□□□□ -0.37
PRPF39-204ENST00000553605 SEMA4BQ9NPR2 832 aaPredicted RBP12.76□□□□□ -0.37
PRPF39-204ENST00000553605 SACM1LQ9NTJ5 587 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 LMBRD1Q9NUN5 540 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 ZFATQ9P243 1243 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 MYOTQ9UBF9 498 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 PPIEQ9UNP9 301 aaKnown RBP12.76□□□□□ -0.37
PRPF39-204ENST00000553605 GTF3C3Q9Y5Q9 886 aa12.76□□□□□ -0.37
PRPF39-204ENST00000553605 SH3D21A4FU49 640 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 WWP2O00308 870 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 NIPSNAP2O75323 286 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 B3GALT4O96024 378 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 ALOX12P18054 663 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 FMO4P31512 558 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 GPR143P51810 404 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 COPS2P61201 443 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 DMTNQ08495 405 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 KCNJ11Q14654 390 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 RPS6KA1Q15418 735 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 SIX1Q15475 284 aaPredicted RBP12.75□□□□□ -0.37
PRPF39-204ENST00000553605 TERF2Q15554 542 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 ACKR1Q16570 336 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 ACSF3Q4G176 576 aaPredicted RBP12.75□□□□□ -0.37
PRPF39-204ENST00000553605 NIPAL1Q6NVV3 410 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 LACC1Q8IV20 430 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 FAM71DQ8N9W8 422 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 GOLM1Q8NBJ4 401 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 KRT35Q92764 455 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 PEX13Q92968 403 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 SCYL1Q96KG9 808 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 BIRC8Q96P09 236 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 PNO1Q9NRX1 252 aaKnown RBP12.75□□□□□ -0.37
PRPF39-204ENST00000553605 JKAMPQ9P055 326 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 EFR3BQ9Y2G0 817 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 NPFFR2Q9Y5X5 522 aa12.75□□□□□ -0.37
PRPF39-204ENST00000553605 EML6Q6ZMW3 1958 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 PSMD12O00232 456 aaPredicted RBP12.74□□□□□ -0.37
PRPF39-204ENST00000553605 PJA2O43164 708 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 PHF1O43189 567 aaPredicted RBP12.74□□□□□ -0.37
PRPF39-204ENST00000553605 P04436 131 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 NID1P14543 1247 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 CHRM3P20309 590 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 GRK3P35626 688 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 HIPK1Q86Z02 1210 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 REXO1L1PQ8IX06 675 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 MFSD9Q8NBP5 474 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 PPP1R14CQ8TAE6 165 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 NEIL3Q8TAT5 605 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 HSPBAP1Q96EW2 488 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 PDLIM2Q96JY6 352 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 SGCZQ96LD1 299 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 OSBPL8Q9BZF1 889 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 GSX2Q9BZM3 304 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 RHBGQ9H310 441 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 CCDC177Q9NQR7 707 aaPredicted RBP12.74□□□□□ -0.37
PRPF39-204ENST00000553605 SPTLC3Q9NUV7 552 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 GALPQ9UBC7 116 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 TCAF1Q9Y4C2 921 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 ATG4BQ9Y4P1 393 aa12.74□□□□□ -0.37
PRPF39-204ENST00000553605 NDUFS4O43181 175 aa12.73□□□□□ -0.37
PRPF39-204ENST00000553605 CEP104O60308 925 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms