RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 CD244Q9BZW8 370 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 PHACTR1Q9C0D0 580 aa17.09■□□□□ 0.33
SHMT2-206ENST00000553529 NBPF19A0A087WUL8 3843 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 DYTNA2CJ06 578 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 KLHL41O60662 606 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 CLDN1O95832 211 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 LTA4HP09960 611 aaKnown RBP17.08■□□□□ 0.32
SHMT2-206ENST00000553529 TDGF1P3P51864 188 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 ACTN3Q08043 901 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-206ENST00000553529 TUBA3CQ13748 450 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 WHAMMP3Q1A5X7 153 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 ACER2Q5QJU3 275 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 ABHD17BQ5VST6 288 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 ZNF324BQ6AW86 544 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-206ENST00000553529 SPINK14Q6IE38 97 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 TUBA3EQ6PEY2 450 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 MMGT1Q8N4V1 131 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 TBC1D19Q8N5T2 526 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 HAS2Q92819 552 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 GPR78Q96P69 363 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 SLX1AQ9BQ83 275 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 TSPAN10Q9H1Z9 355 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-206ENST00000553529 LIN28AQ9H9Z2 209 aaKnown RBP17.08■□□□□ 0.32
SHMT2-206ENST00000553529 KLHL1Q9NR64 748 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 C19orf25Q9UFG5 118 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-206ENST00000553529 ZNF223Q9UK11 482 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-206ENST00000553529 OSGIN2Q9Y236 505 aa17.08■□□□□ 0.32
SHMT2-206ENST00000553529 OR5H15A6NDH6 313 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 PRKNO60260 465 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-206ENST00000553529 PRMT3O60678 531 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 PRKRAO75569 313 aaKnown RBP17.07■□□□□ 0.32
SHMT2-206ENST00000553529 SIX3O95343 332 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-206ENST00000553529 CD96P40200 585 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 MSH2P43246 934 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 ID2Q02363 134 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 H3F3CQ6NXT2 135 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 RPS27LQ71UM5 84 aaKnown RBP17.07■□□□□ 0.32
SHMT2-206ENST00000553529 NFAM1Q8NET5 270 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-206ENST00000553529 DOK4Q8TEW6 326 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 THAP3Q8WTV1 239 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-206ENST00000553529 GAL3ST3Q96A11 431 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 LPAR4Q99677 370 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 FAM129AQ9BZQ8 928 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 CDCP1Q9H5V8 836 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 MMP25Q9NPA2 562 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 NUDT4Q9NZJ9 180 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 COPG2Q9UBF2 871 aa17.07■□□□□ 0.32
SHMT2-206ENST00000553529 HIVEP3Q5T1R4 2406 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 CNTRLQ7Z7A1 2325 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 A0A096LPK6 155 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 TCRBV16S1A1N1A0A5B0 115 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 KERAO60938 352 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 H2AFYO75367 372 aaKnown RBP17.06■□□□□ 0.32
SHMT2-206ENST00000553529 LDLRP01130 860 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 PCNAP12004 261 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 RNH1P13489 461 aaKnown RBP17.06■□□□□ 0.32
SHMT2-206ENST00000553529 PIK3CGP48736 1102 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 IRF8Q02556 426 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 ABHD17CQ6PCB6 329 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 FAM180AQ6UWF9 173 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 QSOX2Q6ZRP7 698 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 TBC1D1Q86TI0 1168 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-206ENST00000553529 ZNF227Q86WZ6 799 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 TCAIMQ8N3R3 496 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 ZNF321PQ8N8H1 164 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 ST6GALNAC3Q8NDV1 305 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 MDS2Q8NDY4 140 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 M1APQ8TC57 530 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 WDR34Q96EX3 536 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 PTCD3Q96EY7 689 aaKnown RBP17.06■□□□□ 0.32
SHMT2-206ENST00000553529 REXO4Q9GZR2 422 aaKnown RBP17.06■□□□□ 0.32
SHMT2-206ENST00000553529 VPS11Q9H270 941 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 PRDM7Q9NQW5 492 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 PNO1Q9NRX1 252 aaKnown RBP17.06■□□□□ 0.32
SHMT2-206ENST00000553529 OLAHQ9NV23 265 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 GPRC5BQ9NZH0 403 aa17.06■□□□□ 0.32
SHMT2-206ENST00000553529 PLEKHB1Q9UF11 243 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-206ENST00000553529 TRAV17A0A0B4J275 112 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 SAGE2PA6NJ88 616 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 GABRR3A8MPY1 467 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 PRAMEF2O60811 474 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 CLEC3AO75596 197 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 MYO1DO94832 1006 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 TGFB1P01137 390 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 S100BP04271 92 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-206ENST00000553529 GP1BBP13224 206 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 JAK1P23458 1154 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 TPP2P29144 1249 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-206ENST00000553529 LIM2P55344 173 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 DDX39BQ13838 428 aaKnown RBP17.05■□□□□ 0.32
SHMT2-206ENST00000553529 PFKFB4Q16877 469 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 ADPRMQ3LIE5 342 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 C1QL3Q5VWW1 255 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 LRRC70Q7Z2Q7 622 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 SCUBE1Q8IWY4 988 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 GSPT2Q8IYD1 628 aaKnown RBP17.05■□□□□ 0.32
SHMT2-206ENST00000553529 KRT78Q8N1N4 520 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 TEX9Q8N6V9 391 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 OR2L5Q8NG80 312 aa17.05■□□□□ 0.32
SHMT2-206ENST00000553529 STAG3L4Q8TBR4 150 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms