RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ITM2BQ9Y287 266 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF281Q9Y2X9 895 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 YARS2Q9Y2Z4 477 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CPSF4LA6NMK7 179 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FADS2P1A8MWK0 482 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 E9PAM4 449 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 PRMT5O14744 637 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 MATN3O15232 486 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 DYRK3O43781 588 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 GPR32O75388 356 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 KDM4BO94953 1096 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 IL33O95760 270 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TRBC1P01850 177 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OSMP13725 252 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RPS3P23396 243 aaKnown RBP eCLIP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 NOS3P29474 1203 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 IDUAP35475 653 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CENPAP49450 140 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TTPAP49638 278 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 AP2S1P53680 142 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 EEFSECP57772 596 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 DAOAP59103 153 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RAC1P63000 192 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OLR1P78380 273 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ENPEPQ07075 957 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CNTN1Q12860 1018 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 GTF2H2Q13888 395 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SEMA3AQ14563 771 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 WSCD2Q2TBF2 565 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 BTBD16Q32M84 506 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 MINDY4Q4G0A6 757 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 UNC50Q53HI1 259 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 LRRC73Q5JTD7 316 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OR2T5Q6IEZ7 315 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 GTF2H2CQ6P1K8 395 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 MSANTD2Q6P1R3 559 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TRIM40Q6P9F5 258 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 USP43Q70EL4 1123 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 VTCN1Q7Z7D3 282 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ADAMTSL2Q86TH1 951 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 KIF18BQ86Y91 864 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM126BQ8IUX1 230 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 DENND1CQ8IV53 801 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ADGRG5Q8IZF4 528 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OR52B6Q8NGF0 335 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OR13J1Q8NGT2 312 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OR2T29Q8NH02 315 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 LINC01599Q8WXQ3 324 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 MYRFLQ96LU7 910 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SLC30A2Q9BRI3 323 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ITPAQ9BY32 194 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FZD8Q9H461 694 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 NSUN3Q9H649 340 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TCF7L1Q9HCS4 588 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM138Q9NPI0 162 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 C1orf109Q9NX04 203 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RCOR3Q9P2K3 495 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 MYO7AQ13402 2215 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 A0A096LPI6 279 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SAP18O00422 153 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 PRRG1O14668 218 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TSPAN1O60635 241 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RPP40O75818 363 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CDRT1O95170 752 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SCELO95171 688 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 IFNA14P01570 189 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FAM87AP0C7U9 286 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 GADD45AP24522 165 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 C21orf33P30042 268 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 AXLP30530 894 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 PPP5CP53041 499 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CDKN2DP55273 166 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ST3GAL4Q11206 333 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TUBA3CQ13748 450 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RFTN1Q14699 578 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ATP6AP1Q15904 470 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RUNDC3AQ59EK9 446 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 WDR45BQ5MNZ6 344 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ANKRD34AQ69YU3 496 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 KIAA0930Q6ICG6 404 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 BORAQ6PGQ7 559 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 LINC00114Q6XXX2 140 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TPGS1Q6ZTW0 290 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CCDC28AQ8IWP9 274 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 LRRC52Q8N7C0 313 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 LSM14AQ8ND56 463 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ZUFSPQ96AP4 578 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TMCO6Q96DC7 493 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 PKP4Q99569 1192 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 GAL3ST1Q99999 423 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 YTHDF1Q9BYJ9 559 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SLC25A51Q9H1U9 297 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SMOC1Q9H4F8 434 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 C8orf4Q9NR00 106 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 EIF3KQ9UBQ5 218 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RABL2BQ9UNT1 228 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RWDD3Q9Y3V2 267 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SPIN1Q9Y657 262 aaPredicted RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms