RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 HYAL2Q12891 473 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 SLBPQ14493 270 aaKnown RBP eCLIP12.29□□□□□ -0.44
RTN3-213ENST00000543552 TGFBIQ15582 683 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 MAPKAPK3Q16644 382 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 SLC25A25Q6KCM7 469 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 TRIM40Q6P9F5 258 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 XKRXQ6PP77 449 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 SLCO4C1Q6ZQN7 724 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 GALNTL5Q7Z4T8 443 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 MRGPRGQ86SM5 289 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 GPSM1Q86YR5 675 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.29□□□□□ -0.44
RTN3-213ENST00000543552 SHISA5Q8N114 240 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 CA13Q8N1Q1 262 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 POGLUT1Q8NBL1 392 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 CREB3L4Q8TEY5 395 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 ITLN2Q8WWU7 325 aaPredicted RBP12.29□□□□□ -0.44
RTN3-213ENST00000543552 CCT6BQ92526 530 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 SMIM10Q96HG1 83 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 FRMD6Q96NE9 622 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 NPAS2Q99743 824 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 CPNE1Q99829 537 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 CCDC77Q9BR77 488 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 NT5DC2Q9H857 520 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 DNAJC11Q9NVH1 559 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 WHRNQ9P202 907 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 SH3BGRL2Q9UJC5 107 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 SNX24Q9Y343 169 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 LRIT2A6NDA9 550 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 NCF1BA6NI72 391 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 NCF1CA8MVU1 366 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 ERI3O43414 337 aaKnown RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 NME2P1O60361 137 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 CLEC3AO75596 197 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 GSTA2P09210 222 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 NCF1P14598 390 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 STMN1P16949 149 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 AGAP20933 346 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 NME2P22392 152 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 HLCSP50747 726 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 CLCN2P51788 898 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 HSD17B7P56937 341 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 MLF1P58340 268 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 BTN3A2P78410 334 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 BTG2P78543 158 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 SRSF11Q05519 484 aaKnown RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 LAPTM5Q13571 262 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 PAGE2BQ5JRK9 111 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 SP5Q6BEB4 398 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 SULT1C3Q6IMI6 304 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 BNC2Q6ZN30 1099 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 CAPN12Q6ZSI9 719 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 CEP97Q8IW35 865 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 ARMC10Q8N2F6 343 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 GHDCQ8N2G8 530 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 KIF2BQ8N4N8 673 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 B3GNT7Q8NFL0 401 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 ANKRD49Q8WVL7 239 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 ERP44Q9BS26 406 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 HES7Q9BYE0 225 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 KLHL31Q9H511 634 aa12.28□□□□□ -0.44
RTN3-213ENST00000543552 TRIM45Q9H8W5 580 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 COPS7BQ9H9Q2 264 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 KLF13Q9Y2Y9 288 aaPredicted RBP12.28□□□□□ -0.44
RTN3-213ENST00000543552 CSMD1Q96PZ7 3565 aa12.27□□□□□ -0.44
RTN3-213ENST00000543552 NPIPA5E9PKD4 350 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 TP73O15350 636 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 MAN1A2O60476 641 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 DNAJB6O75190 326 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 MYO1DO94832 1006 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 CCDC166P0CW27 439 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 ABOP16442 354 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 PTGER4P35408 488 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 GGT5P36269 586 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 GP5P40197 560 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 GDF5P43026 501 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 RAB38P57729 211 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 SLC13A2Q13183 592 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 PDK4Q16654 411 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 HIST2H2ACQ16777 129 aaPredicted RBP12.27□□□□□ -0.45
RTN3-213ENST00000543552 HIST2H2AA3Q6FI13 130 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 MYO7BQ6PIF6 2116 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 Q6ZPB1 254 aaPredicted RBP12.27□□□□□ -0.45
RTN3-213ENST00000543552 CYS1Q717R9 158 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.27□□□□□ -0.45
RTN3-213ENST00000543552 SPPL2CQ8IUH8 684 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 ZNF595Q8IYB9 648 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 AMER2Q8N7J2 671 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 SNX31Q8N9S9 440 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 C7orf57Q8NEG2 295 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 OR2L5Q8NG80 312 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 MS4A6EQ96DS6 147 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 PTCD3Q96EY7 689 aaKnown RBP12.27□□□□□ -0.45
RTN3-213ENST00000543552 VMP1Q96GC9 406 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 PDLIM2Q96JY6 352 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 GPR22Q99680 433 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 RBBP8Q99708 897 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 MCMBPQ9BTE3 642 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 EFCAB11Q9BUY7 163 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 PHACTR1Q9C0D0 580 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms