RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SMIM10Q96HG1 83 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 SLC6A16Q9GZN6 736 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 AICDAQ9GZX7 198 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 GSX1Q9H4S2 264 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 ZDHHC11Q9H8X9 412 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 DNAJB12Q9NXW2 375 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 TRMT6Q9UJA5 497 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 ZFP69BQ9UJL9 534 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 FBXO5Q9UKT4 447 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 FBXW2Q9UKT8 454 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 PPIEQ9UNP9 301 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 CLDN16Q9Y5I7 305 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 FAM215AQ9Y5M1 114 aa16.58■□□□□ 0.24
CLSTN3-214ENST00000542663 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 A0A0G2JMM0 328 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 A0A1W2PPB8 328 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 A0A1W2PRS3 328 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 TMEM200CA6NKL6 621 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 KIR3DP1A8MWS1 328 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 TGFBR3LH3BV60 316 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 SLC16A5O15375 505 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 CTAG2O75638 210 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 MYO1DO94832 1006 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 TUBB4AP04350 444 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 RNH1P13489 461 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 SCTRP47872 440 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 VPS41P49754 854 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 PPIAP62937 165 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 SARNPP82979 210 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 RGS1Q08116 209 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 RTL6Q6ICC9 239 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 C16orf47Q6ZP98 133 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 CLYBLQ8N0X4 340 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 CA13Q8N1Q1 262 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 CHDHQ8NE62 594 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 OR2M7Q8NG81 312 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 OR5M9Q8NGP3 310 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 PDLIM2Q96JY6 352 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 NDNQ99608 321 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 TTYH2Q9BSA4 534 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 RHBGQ9H310 441 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 KLHL31Q9H511 634 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 CLK4Q9HAZ1 481 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 SLC24A3Q9HC58 644 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 TIMMDC1Q9NPL8 285 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 DLL4Q9NR61 685 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 ST6GALNAC2Q9UJ37 374 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 GUCA1BQ9UMX6 200 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 LIPGQ9Y5X9 500 aa16.57■□□□□ 0.24
CLSTN3-214ENST00000542663 A0A0G2JNJ9 132 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 MAGEB16A2A368 324 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 SDR42E2A6NKP2 422 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 FAM166BA8MTA8 275 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 FGGP02679 453 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 ACVR2AP27037 513 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 AHRP35869 848 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 HNF4AP41235 474 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 SSR4P51571 173 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 FOXD4Q12950 439 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 GPS1Q13098 491 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 TERF2Q15554 542 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 CEBPEQ15744 281 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 DUPD1Q68J44 220 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 PAOXQ6QHF9 649 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 PAQR3Q6TCH7 311 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 LIX1LQ8IVB5 337 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 LMNTD2Q8IXW0 634 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 NEIL2Q969S2 332 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 NCLNQ969V3 563 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 VMP1Q96GC9 406 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 TTTY12Q9BZ98 90 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 LIN28AQ9H9Z2 209 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 C20orf96Q9NUD7 363 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 Q9UFV3 132 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 YARS2Q9Y2Z4 477 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 MPDZO75970 2070 aa16.56■□□□□ 0.24
CLSTN3-214ENST00000542663 ABCA2Q9BZC7 2435 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 OR2J2O76002 312 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 GLSO94925 669 aaPredicted RBP16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 IGHG3P01860 377 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 GLI4P10075 376 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 MLNP12872 115 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 PPP2R1BP30154 601 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 MAGEA3P43357 314 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 ZFP36L2P47974 494 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 RGS4P49798 205 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 CDKN2DP55273 166 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 HSP90AA5PQ58FG0 334 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 XKR6Q5GH73 641 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 RBM20Q5T481 1227 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 SCUBE1Q8IWY4 988 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 PALM2Q8IXS6 379 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 MYO1HQ8N1T3 1032 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 ARMC2Q8NEN0 867 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 OR10Q1Q8NGQ4 319 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 CALML6Q8TD86 181 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 TSNARE1Q96NA8 513 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 SERPINB12Q96P63 405 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 POLDIP3Q9BY77 421 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 PNO1Q9NRX1 252 aaKnown RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms