RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CROCCP3Q8IVE0 287 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 ZSWIM3Q96MP5 696 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 G6PC3Q9BUM1 346 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 CPEB1Q9BZB8 566 aaKnown RBP13.58□□□□□ -0.24
USP3-204ENST00000540797 NOX1Q9Y5S8 564 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 WASF2Q9Y6W5 498 aa13.58□□□□□ -0.24
USP3-204ENST00000540797 HOXC13P31276 330 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 PPP1R3AQ16821 1122 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 C7orf57Q8NEG2 295 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 IL17CQ9P0M4 197 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 ZFR2Q9UPR6 939 aaKnown RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 POFUT2Q9Y2G5 429 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 ANXA2P2A6NMY6 339 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 WASHC1A8K0Z3 465 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 WASH3PC4AMC7 463 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 ANXA2P07355 339 aaKnown RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 AOC1P19801 751 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 SDC2P34741 201 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 GJA4P35212 333 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 CLDN2P57739 230 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 WASH2PQ6VEQ5 465 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 TMIEQ8NEW7 156 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 COQ8BQ96D53 544 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 ZBP1Q9H171 429 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 TMEM184CQ9NVA4 438 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 RIMKLBQ9ULI2 386 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 NHSQ6T4R5 1651 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 VSTM5A8MXK1 200 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 TLR4O00206 839 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 TYROBPO43914 113 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 RBMXL2O75526 392 aaKnown RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 TNFRSF4P43489 277 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 ZNF846Q147U1 533 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 RGS21Q2M5E4 152 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 PARS2Q7L3T8 475 aaKnown RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 UFD1Q92890 307 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 GFM1Q96RP9 751 aaKnown RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 TCF7L1Q9HCS4 588 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 C14orf105Q9NVL8 296 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 LOC110117498-PIK3R3F6TDL0 507 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 BLOC1S5-TXNDC5H3BN57 136 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 PTGR1Q14914 329 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 OR4D1Q15615 310 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 COLEC12Q5KU26 742 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 MANEALQ5VSG8 457 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 PTCRAQ6ISU1 281 aaPredicted RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 LNX2Q8N448 690 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 NUP43Q8NFH3 380 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 GPRC5BQ9NZH0 403 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 NUMBLQ9Y6R0 609 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 PRODHO43272 600 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 NUDT1P36639 197 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 PLCXD2Q0VAA5 305 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 IL18Q14116 193 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 CYBRD1Q53TN4 286 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 TCTE1Q5JU00 501 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 OR4C11Q6IEV9 310 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 OR52E8Q6IFG1 317 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 HSD11B1LQ7Z5J1 315 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 LRRC25Q8N386 305 aaPredicted RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 CD180Q99467 661 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 RPF2Q9H7B2 306 aaKnown RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 CHMP1AQ9HD42 196 aaPredicted RBP13.57□□□□□ -0.24
USP3-204ENST00000540797 ABCB9Q9NP78 766 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 MARCH5Q9NX47 278 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 ACTR3BQ9P1U1 418 aa13.57□□□□□ -0.24
USP3-204ENST00000540797 TACSTD2P09758 323 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ADARP55265 1226 aaKnown RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 MC1RQ01726 317 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 MLLT1Q03111 559 aaPredicted RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 DEFB133Q30KQ1 61 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 GALNT12Q8IXK2 581 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 OR10Q1Q8NGQ4 319 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 HUS1BQ8NHY5 278 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 SPPL3Q8TCT6 385 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 TMBIM1Q969X1 311 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 UCK2Q9BZX2 261 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 BRD7Q9NPI1 651 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 A0A0U1RQS6 177 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 PSMD9O00233 223 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 EIF3FO00303 357 aaPredicted RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 EMC8O43402 210 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 MYOGP15173 224 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 HSD11B1P28845 292 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 SMSP52788 366 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 GBX2P52951 348 aaPredicted RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 AQP4P55087 323 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ABRAXAS2Q15018 415 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 SIX1Q15475 284 aaPredicted RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 SMU1Q2TAY7 513 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 KRTCAP2Q8N6L1 136 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 GATSQ8NAP1 163 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 RLN3Q8WXF3 142 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 NR4A3Q92570 626 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 FATE1Q969F0 183 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 IL4I1Q96RQ9 567 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 IFT52Q9Y366 437 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 HCRTR2O43614 444 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 IL33O95760 270 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 CHRM5P08912 532 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms